Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2031 | ATGATGATGATGAAAGGAAATTTAATGGTGGATGAGAATTTGTCAGTTTTGATTTGTGCTTCTGGAGAAATAACAACAAGAAATGAAATTACCGCTACTGGCCCTATCTATTCTCATCAATCCTCTGCTTCCACAAATCAACCGCTACCACCACCGCCACTACCACTACCACTACCCCCGCCACCGTCGAAGAAGAAGCGAAATCTTCCCGGCAACCCAGACCCAGAAGCGGAAGTGATTGCCTTATCACCAAAATCACTTCTAGCAACGAATAGATTCATATGTGAGATTTGTAAGAAGGGGTTTCAAAGAGATCAGAATCTACAGCTCCACAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAAGCGACATGCGTGCATCATCACCCGTCGAGAGCTCTCGGTGATCTAACCGGGATCAAGAAGCACTTCTGTAGAAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAATGTTCAAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAGATGTGACTGCGGAACCCTCTTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGCAATGCCTTGGCTCAGGAAAGTACCAATTTTAATAATAACAATAATAACCCAACTCCAAAAACATCCCTTTTCCCATCTATTTCCCCTCATAATTTTCCTCTTAAAATCGAACATCAAGACCCTTTTTTTCCTTCTTTAAATCCTCAAAACCCTAACAACCCTACTTCTACCGGGTTCGGTTTACCTGGTCCGGGTCCGGGTCCGGGTCAACTTTTTGCTTCTTGTCCTGCATGGGAAGTGAATAATAATAATAATAATAATAATTCATGTCCAGCTGAAATTGCTCCATTTTTACATCACGTGATGGGTTTTGAAGAGGCGTCCTTTGAAGAAGCTCTCAATGGGATATTGATGAATAATAATAATAGAGCTCATAAAGACGGTGGCAAAGGTGGCGCCGCCGCAGCCGGAGACATAACGAGGGATTTTCTTGGGCTGAGACCGGTGGCGGGTACACAGCCGGATCATCCTATGTTTCAGAATCATGAGATGATAAACAACGACATGTCGGTTTTGGATTCTTCTTCTTCGACAACATTTGGATTGCACCAGAACCAGAACCAGAACCAGAACACGACATGTTGGCGTTCATAA | 1245 | 43.69 | MMMMKGNLMVDENLSVLICASGEITTRNEITATGPIYSHQSSASTNQPLPPPPLPLPLPPPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEATCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNFNNNNNNPTPKTSLFPSISPHNFPLKIEHQDPFFPSLNPQNPNNPTSTGFGLPGPGPGPGQLFASCPAWEVNNNNNNNNSCPAEIAPFLHHVMGFEEASFEEALNGILMNNNNRAHKDGGKGGAAAAGDITRDFLGLRPVAGTQPDHPMFQNHEMINNDMSVLDSSSSTTFGLHQNQNQNQNTTCWRS | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 29394611 | 29396502 | - | CcPI632755_05g020310.1 | Cco05g2031 | 179659 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2031 | 414 | SMART | c2h2final6 | 169 | 189 | IPR013087 | - | |
Cco05g2031 | 414 | SMART | c2h2final6 | 93 | 115 | IPR013087 | - | |
Cco05g2031 | 414 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 168 | 192 | - | - | |
Cco05g2031 | 414 | MobiDBLite | consensus disorder prediction | 37 | 77 | - | - | |
Cco05g2031 | 414 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 130 | 164 | - | - | |
Cco05g2031 | 414 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 195 | 234 | - | - | |
Cco05g2031 | 414 | SUPERFAMILY | beta-beta-alpha zinc fingers | 92 | 189 | IPR036236 | - | |
Cco05g2031 | 414 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 95 | 115 | IPR013087 | - | |
Cco05g2031 | 414 | FunFam | protein indeterminate-domain 12-like | 72 | 140 | - | - | |
Cco05g2031 | 414 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 47 | 372 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cco05g2031 | 414 | MobiDBLite | consensus disorder prediction | 46 | 68 | - | - | |
Cco05g2031 | 414 | Gene3D | Classic Zinc Finger | 89 | 116 | - | - | |
Cco05g2031 | 414 | MobiDBLite | consensus disorder prediction | 392 | 414 | - | - | |
Cco05g2031 | 414 | Gene3D | Classic Zinc Finger | 162 | 231 | - | - | |
Cco05g2031 | 414 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 93 | 115 | IPR013087 | - | |
Cco05g2031 | 414 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 147 | 226 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2031 | Cco-Chr5:29394611 | Cco09g0708 | Cco-Chr9:6393795 | 1.10E-84 | dispersed | |
Cco05g2031 | Cco-Chr5:29394611 | Cco09g0065 | Cco-Chr9:563250 | 9.30E-89 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59339 | None | None | None | None | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2031 | K25870 | - | csv:101215280 | 600.512 |