Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2031 ATGATGATGATGAAAGGAAATTTAATGGTGGATGAGAATTTGTCAGTTTTGATTTGTGCTTCTGGAGAAATAACAACAAGAAATGAAATTACCGCTACTGGCCCTATCTATTCTCATCAATCCTCTGCTTCCACAAATCAACCGCTACCACCACCGCCACTACCACTACCACTACCCCCGCCACCGTCGAAGAAGAAGCGAAATCTTCCCGGCAACCCAGACCCAGAAGCGGAAGTGATTGCCTTATCACCAAAATCACTTCTAGCAACGAATAGATTCATATGTGAGATTTGTAAGAAGGGGTTTCAAAGAGATCAGAATCTACAGCTCCACAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAAGCGACATGCGTGCATCATCACCCGTCGAGAGCTCTCGGTGATCTAACCGGGATCAAGAAGCACTTCTGTAGAAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAATGTTCAAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAGATGTGACTGCGGAACCCTCTTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGCAATGCCTTGGCTCAGGAAAGTACCAATTTTAATAATAACAATAATAACCCAACTCCAAAAACATCCCTTTTCCCATCTATTTCCCCTCATAATTTTCCTCTTAAAATCGAACATCAAGACCCTTTTTTTCCTTCTTTAAATCCTCAAAACCCTAACAACCCTACTTCTACCGGGTTCGGTTTACCTGGTCCGGGTCCGGGTCCGGGTCAACTTTTTGCTTCTTGTCCTGCATGGGAAGTGAATAATAATAATAATAATAATAATTCATGTCCAGCTGAAATTGCTCCATTTTTACATCACGTGATGGGTTTTGAAGAGGCGTCCTTTGAAGAAGCTCTCAATGGGATATTGATGAATAATAATAATAGAGCTCATAAAGACGGTGGCAAAGGTGGCGCCGCCGCAGCCGGAGACATAACGAGGGATTTTCTTGGGCTGAGACCGGTGGCGGGTACACAGCCGGATCATCCTATGTTTCAGAATCATGAGATGATAAACAACGACATGTCGGTTTTGGATTCTTCTTCTTCGACAACATTTGGATTGCACCAGAACCAGAACCAGAACCAGAACACGACATGTTGGCGTTCATAA 1245 43.69 MMMMKGNLMVDENLSVLICASGEITTRNEITATGPIYSHQSSASTNQPLPPPPLPLPLPPPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEATCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNFNNNNNNPTPKTSLFPSISPHNFPLKIEHQDPFFPSLNPQNPNNPTSTGFGLPGPGPGPGQLFASCPAWEVNNNNNNNNSCPAEIAPFLHHVMGFEEASFEEALNGILMNNNNRAHKDGGKGGAAAAGDITRDFLGLRPVAGTQPDHPMFQNHEMINNDMSVLDSSSSTTFGLHQNQNQNQNTTCWRS 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29394611 29396502 - CcPI632755_05g020310.1 Cco05g2031 179659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2031 414 SMART c2h2final6 169 189 IPR013087 -
Cco05g2031 414 SMART c2h2final6 93 115 IPR013087 -
Cco05g2031 414 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 168 192 - -
Cco05g2031 414 MobiDBLite consensus disorder prediction 37 77 - -
Cco05g2031 414 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 130 164 - -
Cco05g2031 414 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 195 234 - -
Cco05g2031 414 SUPERFAMILY beta-beta-alpha zinc fingers 92 189 IPR036236 -
Cco05g2031 414 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Cco05g2031 414 FunFam protein indeterminate-domain 12-like 72 140 - -
Cco05g2031 414 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 47 372 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco05g2031 414 MobiDBLite consensus disorder prediction 46 68 - -
Cco05g2031 414 Gene3D Classic Zinc Finger 89 116 - -
Cco05g2031 414 MobiDBLite consensus disorder prediction 392 414 - -
Cco05g2031 414 Gene3D Classic Zinc Finger 162 231 - -
Cco05g2031 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
Cco05g2031 414 FunFam protein indeterminate-domain 5, chloroplastic-like 147 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2031 Cco-Chr5:29394611 Cco09g0708 Cco-Chr9:6393795 1.10E-84 dispersed
Cco05g2031 Cco-Chr5:29394611 Cco09g0065 Cco-Chr9:563250 9.30E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59339 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2031 K25870 - csv:101215280 600.512