Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g2035 | ATGGATGATTTTTTGGCGAGTGTGCCTGTGGGAGTGGGTGCAATATTGTTCACGACTTTGTGCGTCGTGGGAGGTGGGTTGGTTTATTTCTATGGACCGTACTGGGGAGTGAGAAGGGTGCCTGGTCCACCAGCTATCCCGCTGGTCGGACACCTTCCCTTGCTGGCTAAGTACGGTCCAGACGTTTTCTCTGTCCTCGCCTCCCAATATGGTCCTATCTTCAGGTTCCATATGGGTAGGCAGCCATTGATAATTATAGCAGACCCTGAGCTTTGTAAAGAAGTCGGTATCAAGAAATTCAAGGACATCCCAAACAGAAGTGTCCCTTCTCCAATATCAGCTTCCCCGCTTCATCAGAAAGGTCTTTTCTTCACAAGGGATGCAAGATGGTCGACAATGCGAAACACCATACTATCGGTCTATCAGCCCTCTCATCTAACGAGCCTAATACCTACTATGCAATCAATCATTGAAACTGCAACTCAAAATCTCCATTCCTCTGTCGAGGAAGATATCTCTTTCTCCAATCTCTCCCTCAAATTGACCACTGATGTGATCGGAACAGCAGCCTTTGGTGTCAACTTTGGACTCTCTAATCCACAAGCAACCAAAACCTGTGGTACCAATGGCAATGACAGCAAAAATGATGAAGTTTCGGACTTCATCAATCAACATATCTACTCTACAACGCAGCTCAAGATGGATTTGTCGGGTTCCTTCTCAATCATTTTGGGACTACTTATCCCTATACTCCAAGAACCATTTAGACAAGTCCTGAAGAGAATACCATTCACTATGGACTGGAAAGTTGACCGGACAAATCAGAAGTTGAGCGGTCGGCTTAATGAGATTGTTGAAAAGAGAATGAAGTGTAACGATCGAGGTTCAAAAGACTTCTTATCACTCATTTTGAGAGCAAGAGAATCAGAGACGGTGTCAAGGAATGTATTTACTCCAGACTACATCAGTGCAGTGACGTACGAACACCTACTTGCTGGATCAGCTACTTCAGCATTCACGCTGTCTTCTGTTGTATATTTAGTTGCTGGACATCCAGAAGTTGAGAAGAAGTTGCTTGAAGAGATTGACAACTTTGGTCCATCAGATCAGATACCAACAGCTAATGATCTTCAGCAGAAGTTTCCATATCTTGATCAGGTGATTAAAGAGGCTATGAGATTCTACACTGTTTCCCCTCTAGTAGCTAGGGAGACATCTAAAGATGTAGAGATTGGTGGATATCTTCTTCCGAAGGGGACATGGGTTTGGTTAGCACTTGGAGTTCTTGCCAAGGATCCAAAGAATTTTCCAGAACCAGATAAATTTAAGCCAGAGAGGTTTGATCCGAATGAGGAAGAGGAGAAACAAAGGCATCCCTATGCTTTAATCCCATTTGGAATTGGTCCTCGAGCATGCATTGGTCAAAAATTCGCCCTTCAGGAATTGAAGCTCTCTCTGATCCATTTGTATAGGAAGTTTGCGTTTCGGCATTCCCTCTCCATGGAACAACCTCTTGAACTTGAGTATGGTGTCATTCTCAACTTCAAGAATGGTGTCAAGCTCAGAGTGATAAACCGTAAATAA | 1584 | 43.88 | MDDFLASVPVGVGAILFTTLCVVGGGLVYFYGPYWGVRRVPGPPAIPLVGHLPLLAKYGPDVFSVLASQYGPIFRFHMGRQPLIIIADPELCKEVGIKKFKDIPNRSVPSPISASPLHQKGLFFTRDARWSTMRNTILSVYQPSHLTSLIPTMQSIIETATQNLHSSVEEDISFSNLSLKLTTDVIGTAAFGVNFGLSNPQATKTCGTNGNDSKNDEVSDFINQHIYSTTQLKMDLSGSFSIILGLLIPILQEPFRQVLKRIPFTMDWKVDRTNQKLSGRLNEIVEKRMKCNDRGSKDFLSLILRARESETVSRNVFTPDYISAVTYEHLLAGSATSAFTLSSVVYLVAGHPEVEKKLLEEIDNFGPSDQIPTANDLQQKFPYLDQVIKEAMRFYTVSPLVARETSKDVEIGGYLLPKGTWVWLALGVLAKDPKNFPEPDKFKPERFDPNEEEEKQRHPYALIPFGIGPRACIGQKFALQELKLSLIHLYRKFAFRHSLSMEQPLELEYGVILNFKNGVKLRVINRK | 527 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 29433695 | 29436047 | + | CcPI632755_05g020350.1 | Cco05g2035 | 179663 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g2035 | 527 | Gene3D | Cytochrome P450 | 31 | 527 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2035 | 527 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 465 | 474 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco05g2035 | 527 | PANTHER | THROMBOXANE-A SYNTHASE | 19 | 526 | - | - | |
| Cco05g2035 | 527 | PRINTS | E-class P450 group I signature | 67 | 86 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2035 | 527 | PRINTS | E-class P450 group I signature | 341 | 367 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2035 | 527 | PRINTS | E-class P450 group I signature | 385 | 403 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2035 | 527 | PRINTS | E-class P450 group I signature | 462 | 472 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2035 | 527 | PRINTS | E-class P450 group I signature | 321 | 338 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2035 | 527 | PRINTS | E-class P450 group I signature | 425 | 449 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2035 | 527 | PRINTS | E-class P450 group I signature | 472 | 495 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2035 | 527 | PRINTS | E-class P450 group I signature | 181 | 199 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2035 | 527 | FunFam | Cytochrome P450 3A4 | 28 | 527 | - | - | |
| Cco05g2035 | 527 | PRINTS | P450 superfamily signature | 332 | 349 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2035 | 527 | PRINTS | P450 superfamily signature | 463 | 472 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2035 | 527 | PRINTS | P450 superfamily signature | 472 | 483 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2035 | 527 | PRINTS | P450 superfamily signature | 386 | 397 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2035 | 527 | SUPERFAMILY | Cytochrome P450 | 33 | 526 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2035 | 527 | Pfam | Cytochrome P450 | 41 | 511 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g2035 | Cco-Chr5:29433695 | Cco05g2199 | Cco-Chr5:30765213 | 9.80E-27 | dispersed | |
| Cco05g2035 | Cco-Chr5:29433695 | Cco11g0302 | Cco-Chr11:3027149 | 6.40E-26 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g2035 | K20771 | - | csv:101209772 | 996.882 |