Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2036 | ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACAGAGGAAGTCTGAGAAGGAAGACAATGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGGACACAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAACGGCCGATTCTTTTACTGCCGCTGTCGCCACTGTCCTCCGCGCTCCGCCGAAGAATTTCAGGGCTGTCCGCCAAGAATGGGCTGCAATTAGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGATGCATGCAGGCTCTGGTTCGTGTTCAAGCTCGAGTCAGGGCACGTCGTGTGAGAATGTCAGTCGAGGGGCAGGCTGTGCAGCAATTGCTTAATGAACATCGCAGCAAAGCTGATCTCTTGAAGCAAGCTGAGGAAGGATGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAGAAGCAATTGAAGGCAACGCCAAACTCAACTTCACGAACAAATGCTTCGATTTACGCTCTTAAGAATTACGAGTTTGACAAAAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCAAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACTGAATCATTTGAGGTCACTCCGCCTTCAAAGAGCTGTGTAGAGTCTGTTGTGTCTAAACATTCCAAAAGTTCTGAACCAAGCTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGGATTTCTGCTAAACCTCCCTCAAGTGGGCAAACTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCCACAACTCCCGTTTCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCTAGTTACATGAACTTTACAGAGTCGACAAAAGCGAAACAGAAAACAAATAGTCACTTATCGCACCGAGTTCAAAGGCAGTCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAACGGGGATTCTAAGAGCAGTGCTGGATCTGATTCATCAGTCAATCCCTTTAAGCCATTGATGCTGCCAACACGATTGGATAAGAATGGAACAAAGCTAAGGTTATGA | 1338 | 46.41 | MGGSGKWMKVFIGQRKSEKEDNEKLGSTKTKKWRLWRSPSGDLSSAWKGYKGGHKAASEGSDSPRTADSFTAAVATVLRAPPKNFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKATPNSTSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTESFEVTPPSKSCVESVVSKHSKSSEPSLVKVRKNNVSTRISAKPPSSGQTRSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENGSYSRPSYMNFTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTRLDKNGTKLRL | 445 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 29436599 | 29438409 | - | CcPI632755_05g020360.1 | Cco05g2036 | 179664 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2036 | 445 | MobiDBLite | consensus disorder prediction | 12 | 30 | - | - | |
Cco05g2036 | 445 | ProSiteProfiles | IQ motif profile. | 90 | 118 | - | - | |
Cco05g2036 | 445 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Cco05g2036 | 445 | FunFam | IQ-domain 11 | 89 | 140 | - | - | |
Cco05g2036 | 445 | MobiDBLite | consensus disorder prediction | 295 | 326 | - | - | |
Cco05g2036 | 445 | ProSiteProfiles | IQ motif profile. | 114 | 141 | - | - | |
Cco05g2036 | 445 | MobiDBLite | consensus disorder prediction | 47 | 66 | - | - | |
Cco05g2036 | 445 | PANTHER | IQ-DOMAIN 5-RELATED | 6 | 398 | - | - | |
Cco05g2036 | 445 | SMART | iq_5 | 112 | 133 | IPR000048 | GO:0005515(InterPro) | |
Cco05g2036 | 445 | SMART | iq_5 | 89 | 111 | IPR000048 | GO:0005515(InterPro) | |
Cco05g2036 | 445 | Pfam | IQ calmodulin-binding motif | 114 | 131 | IPR000048 | GO:0005515(InterPro) | |
Cco05g2036 | 445 | Pfam | IQ calmodulin-binding motif | 92 | 111 | IPR000048 | GO:0005515(InterPro) | |
Cco05g2036 | 445 | MobiDBLite | consensus disorder prediction | 410 | 424 | - | - | |
Cco05g2036 | 445 | MobiDBLite | consensus disorder prediction | 410 | 445 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2036 | Cco-Chr5:29436599 | Cco09g2240 | Cco-Chr9:36699663 | 2.30E-29 | dispersed | |
Cco03g1216 | Cco-Chr3:23940354 | Cco05g2036 | Cco-Chr5:29436599 | 2.20E-41 | transposed | |
Cco05g2036 | Cco-Chr5:29436599 | Cco09g0069 | Cco-Chr9:604269 | 1.50E-60 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2036 | - | - | - | 0.0 |