Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2036 ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACAGAGGAAGTCTGAGAAGGAAGACAATGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGGACACAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAACGGCCGATTCTTTTACTGCCGCTGTCGCCACTGTCCTCCGCGCTCCGCCGAAGAATTTCAGGGCTGTCCGCCAAGAATGGGCTGCAATTAGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGATGCATGCAGGCTCTGGTTCGTGTTCAAGCTCGAGTCAGGGCACGTCGTGTGAGAATGTCAGTCGAGGGGCAGGCTGTGCAGCAATTGCTTAATGAACATCGCAGCAAAGCTGATCTCTTGAAGCAAGCTGAGGAAGGATGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAGAAGCAATTGAAGGCAACGCCAAACTCAACTTCACGAACAAATGCTTCGATTTACGCTCTTAAGAATTACGAGTTTGACAAAAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCAAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACTGAATCATTTGAGGTCACTCCGCCTTCAAAGAGCTGTGTAGAGTCTGTTGTGTCTAAACATTCCAAAAGTTCTGAACCAAGCTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGGATTTCTGCTAAACCTCCCTCAAGTGGGCAAACTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCCACAACTCCCGTTTCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCTAGTTACATGAACTTTACAGAGTCGACAAAAGCGAAACAGAAAACAAATAGTCACTTATCGCACCGAGTTCAAAGGCAGTCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAACGGGGATTCTAAGAGCAGTGCTGGATCTGATTCATCAGTCAATCCCTTTAAGCCATTGATGCTGCCAACACGATTGGATAAGAATGGAACAAAGCTAAGGTTATGA 1338 46.41 MGGSGKWMKVFIGQRKSEKEDNEKLGSTKTKKWRLWRSPSGDLSSAWKGYKGGHKAASEGSDSPRTADSFTAAVATVLRAPPKNFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKATPNSTSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTESFEVTPPSKSCVESVVSKHSKSSEPSLVKVRKNNVSTRISAKPPSSGQTRSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENGSYSRPSYMNFTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTRLDKNGTKLRL 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29436599 29438409 - CcPI632755_05g020360.1 Cco05g2036 179664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2036 445 MobiDBLite consensus disorder prediction 12 30 - -
Cco05g2036 445 ProSiteProfiles IQ motif profile. 90 118 - -
Cco05g2036 445 MobiDBLite consensus disorder prediction 1 31 - -
Cco05g2036 445 FunFam IQ-domain 11 89 140 - -
Cco05g2036 445 MobiDBLite consensus disorder prediction 295 326 - -
Cco05g2036 445 ProSiteProfiles IQ motif profile. 114 141 - -
Cco05g2036 445 MobiDBLite consensus disorder prediction 47 66 - -
Cco05g2036 445 PANTHER IQ-DOMAIN 5-RELATED 6 398 - -
Cco05g2036 445 SMART iq_5 112 133 IPR000048 GO:0005515(InterPro)
Cco05g2036 445 SMART iq_5 89 111 IPR000048 GO:0005515(InterPro)
Cco05g2036 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515(InterPro)
Cco05g2036 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515(InterPro)
Cco05g2036 445 MobiDBLite consensus disorder prediction 410 424 - -
Cco05g2036 445 MobiDBLite consensus disorder prediction 410 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2036 Cco-Chr5:29436599 Cco09g2240 Cco-Chr9:36699663 2.30E-29 dispersed
Cco03g1216 Cco-Chr3:23940354 Cco05g2036 Cco-Chr5:29436599 2.20E-41 transposed
Cco05g2036 Cco-Chr5:29436599 Cco09g0069 Cco-Chr9:604269 1.50E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2036 - - - 0.0