Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2041 ATGGAGACCGAGAATGCAGATGAGCTCGCATCGTCGACGGCTTCCACTCTCCTTCCACTCGCCTCCGCCGCGCAGCAGCCATACGTGTCGGAGCTCCTTTCTTTCACCCTCGATCGTCTAAACAAGGAACCGGAGCTTCTTCAGGTGGATGCGGAGCGAATTCGGAGGCAAATACAAGAGGTGGCAGTGGGCAACTACCGAGCTTTCATTGCCGCCGCCGATGCGTTGCTTGCAATTCGAGAAGAAGTATCTTCCATTGATAAGCATCTTGAATCCTTGATATCTGAGATTCCAAATTTGACATCGGGTTGCACAGAGTTTGTTGAATCTGCGGAACAGATTCTGGAGAAGAGGAAGATGAACCAAATATTGCTAACACATCACAGTACTCTGCTTGATTTACTTGAAATTCCTCAGCTTATGGACACGTGTGTAAGAAATGGAAATTATGATGAAGCTCTTGACTTGGAAGCGTTTGTTGCAAAACTTTCAACCATGCACCCTAAAATACCAGTAATTCAAGCCCTAGTGGCAGAAGTCAAGCAAACCACCCAGTCTCTTCTTTCTCAACTTCTCCAAAAACTTCGCTCAAATATTCAGTTACCTGAATGTCTCCGTATCATTGGATATCTTCGTCGAATTGGAGTGTTTAGTGAATATGAAATGCGTTTACAGTTTTTAAGATGCCGAGAGGCATGGCTTACTGGAATTCTCGAAGATCTTGACCAGAGAAATGCTTATGAATATTTGAAAGGAATGATCAATTGTCACAGGACACATCTCTTTGATGTTGTTAACCAATATCGAGCTATATTTGCTGATGATACATCCGGAAGTGAAGAAAATTATGACAGTGGGCTTCTTTTTAGTTGGTCTATGCATCAGATAACTTCTCATCTGAAAACGCTCAAAATAATGCTCCCAAAAATAACAGAAGGTGGATCTCTATCAAATATATTGGAACAGTGCATGTACTGTGCTATGGGGCTTGGCTGGGTTGGAATGGATTTTCGTGGTTTGCTTCCTCCACTTTTTGAAGAGGCGGTTCTCAATTTATTTTCAAAAAATATGGGTACTGCAGTTGATAATTTTCAGTTAGTTCTGGATTCCCATCGTTGGGTTCCACTACCAGCCGTTGGCTTTCCGGCAAGTACTATTGGTGAGGAAAGTCAGGAAGACGTGACTCCACCTTCGTATTTGATGGAACATCCACCTCTTGCTGTTTTTGTGAATGGTGTATCGGCAGCTATGAATGAACTTCGCCATTGTGCCCCTTTGAGTTTGAAACATGTAATAGCTCAGGAATTAATAAAAGGATTGCAGGCTGTTTCTGACTCTTTATTGAGATACAACACAACTCGCATGCTAAAAGATAATGAATCTGGACTTTTCCTCCAGCTTTGCCGGGCATTCATAGAGGTTGCCTATCCACATTGTGCCACTTGTTTTGGCCGCTGTTATCCTGGCGGGGCAACACTTATATTGGATGCAAAGAATTTATACGATGGTATTGGTCGCTTACTGACTGTCTCTTCCTCGAGAGAACTCCCGGAAACAGTCAGTACCATCGAAGAGAAAAACGTTACAGAAAATGGTGATATGGCTGCGCTGGAAAATGGAGCTACATCAGATGCTGATAAGGACCAGAAAAGCCCTTCCTTGCATAGCTCAGTGACGGTTAACCGTCGGTTTCCCGTTACCAATGGCCCTAAAACGCTGCGTTTTAAGTTCAAAAAACCCTCAGCAGAAACCCTGATTCCGCACCTCGATCTGAAGCTCAACAGTTTTGAGGGAGAGAGCATGGCTTTGAATGGAGAGCAACCTGTGGAGCAACAGCCAGAAATGCAGAAGATTCAGATATACTCTACCTCTAGTACTGGAGTTTCTCCTTTCTGGAGAGAGAAGTATGAAAAGGATGCTAAGAAGTACTGGGATATCTTTTATAAAAAGCACCAAGATCGATTTTTCAAGGACCGACACTACCTGGACAAAGAATGGGGCCGATACTTTTCTGCAGAAGAAAGAAAAGTTTTTTTGGAGGTTGGCTGTGGAGCAGGAAACACTGTTTTTCCCTTGATTGCTACATATCCAAATGTTTTCATTCATGCATGTGATTTCTCACCACGAGCAGTGAATTTAGTGAAGACACATAAAGAATTCAATGAGAGCCGTGTTGCTGCATTTGTTTGTGATCTTACTGCTGATGACTTGAGCAACCACATTTCTCCGTCATCGATAGATGTAGTAATGATGATTTTTGTTTTGTCTGCAGTTTCTCCAGAGAGGATGTCCCTTGTGTTGCAAAATGTGAAAAAAGTTTTGAAACCAACTGGACATGTTCTGTTTCGTGACTATGCAACTGGTGACCTTGCTCAGGAACGATTTGATTGCAAGGATCAAAAAATCAGTGAGAATTTTTATGTCCGAGGTGATGGAACTCGTGCTTTCTACTTCTCTAATGAGTTCCTTACAAGTACGTTTAAAGAAAATGGATTTCATGTTAAAGAACTTGGCGTCTGCTGCAAACAAGTCGAGAACCGATCGAGGGATTTGATCATGAATAGGCGATGGGTCCAAGCTGTATTCAGCCTTTCAGAGTTTGCAATTCCAGAAGCTAAACTTAGGGCAGGCTTTCCCGGTCAAGTTAAAACCGAGCCTAGGCCCAAGGAGAACTATTCAGACATGCCTGTCAACGATTTTGAACTTGACTTCTCTGAGGGTGTTGCAATCGATATGTTTGGAATTCCACCTTCTCAGGATAATGAGATTGTTGGGGTGGATGTTAGAGGATGGAATTTCAAAATTAAAGTTCTCTCGAGAGAGTTTCAACATACCTGCAAATCCACTGGTTTGATGCTGTGGGAATCTGCTCGTTTGATGGCCTCTGTCCTCGCAGAAAATCCATCCATATGTGCTGGAAAGAGGGTGTTAGAGCTGGGGTGTGGCTGTGGGGGAATCTGCTCTATGGCTGCTGTTGCCTCCGCTAATCTCGTCGTTGCCACCGACGGAGATCTGAGTGCTCTCAACCTATTATCTCAAAACGTAGCTTCAAATCTCGAGCCACATTTCCTCACCAAACTATTTACGGAGAGACTGGAGTGGGGAAATAGCATCCATGTTGAAACTATCAGAAAAATAAGCACAGGAGGTTTTGATGTCATCATAGGGACCGATGTCACCTATGTTCCGGAAGCTATTTTGCCACTATTTTCTACTGCGAAAGAGCTGATCTCATCTAGCAAGGATTCAGAATGTGCACTGATTCTTTGCCACGTCCTGCGTCGAGTTGACGAGCCAACAATTGTTTCAACTGCTCATCAATTCGGTTTTAGGTTGACTGATTCTTGGACTGCAGGAGTCTCATGCAAGTCATCACAAAGCATTGTGAGTTCTTGGTTCGCTGATAGAGATTGGGATATCCCCAGTACTGCTTTGAATATTATGTACTTCCTTTTAGATAACTGA 3465 43.29 METENADELASSTASTLLPLASAAQQPYVSELLSFTLDRLNKEPELLQVDAERIRRQIQEVAVGNYRAFIAAADALLAIREEVSSIDKHLESLISEIPNLTSGCTEFVESAEQILEKRKMNQILLTHHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVAKLSTMHPKIPVIQALVAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQRNAYEYLKGMINCHRTHLFDVVNQYRAIFADDTSGSEENYDSGLLFSWSMHQITSHLKTLKIMLPKITEGGSLSNILEQCMYCAMGLGWVGMDFRGLLPPLFEEAVLNLFSKNMGTAVDNFQLVLDSHRWVPLPAVGFPASTIGEESQEDVTPPSYLMEHPPLAVFVNGVSAAMNELRHCAPLSLKHVIAQELIKGLQAVSDSLLRYNTTRMLKDNESGLFLQLCRAFIEVAYPHCATCFGRCYPGGATLILDAKNLYDGIGRLLTVSSSRELPETVSTIEEKNVTENGDMAALENGATSDADKDQKSPSLHSSVTVNRRFPVTNGPKTLRFKFKKPSAETLIPHLDLKLNSFEGESMALNGEQPVEQQPEMQKIQIYSTSSTGVSPFWREKYEKDAKKYWDIFYKKHQDRFFKDRHYLDKEWGRYFSAEERKVFLEVGCGAGNTVFPLIATYPNVFIHACDFSPRAVNLVKTHKEFNESRVAAFVCDLTADDLSNHISPSSIDVVMMIFVLSAVSPERMSLVLQNVKKVLKPTGHVLFRDYATGDLAQERFDCKDQKISENFYVRGDGTRAFYFSNEFLTSTFKENGFHVKELGVCCKQVENRSRDLIMNRRWVQAVFSLSEFAIPEAKLRAGFPGQVKTEPRPKENYSDMPVNDFELDFSEGVAIDMFGIPPSQDNEIVGVDVRGWNFKIKVLSREFQHTCKSTGLMLWESARLMASVLAENPSICAGKRVLELGCGCGGICSMAAVASANLVVATDGDLSALNLLSQNVASNLEPHFLTKLFTERLEWGNSIHVETIRKISTGGFDVIIGTDVTYVPEAILPLFSTAKELISSSKDSECALILCHVLRRVDEPTIVSTAHQFGFRLTDSWTAGVSCKSSQSIVSSWFADRDWDIPSTALNIMYFLLDN 1154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29480910 29492072 - CcPI632755_05g020410.1 Cco05g2041 179669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2041 1154 Gene3D Vaccinia Virus protein VP39 621 860 IPR029063 -
Cco05g2041 1154 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8 7 535 IPR007255 GO:0006891(PANTHER)|GO:0017119(PANTHER)|GO:0017119(InterPro)
Cco05g2041 1154 CDD AdoMet_MTases 975 1077 - -
Cco05g2041 1154 Gene3D Vaccinia Virus protein VP39 918 1135 IPR029063 -
Cco05g2041 1154 CDD AdoMet_MTases 678 782 - -
Cco05g2041 1154 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 630 862 IPR029063 -
Cco05g2041 1154 Pfam Dor1-like family 29 362 IPR007255 GO:0017119(InterPro)
Cco05g2041 1154 SUPERFAMILY Cullin repeat-like 131 348 IPR016159 -
Cco05g2041 1154 Pfam Methyltransferase domain 679 780 IPR013217 -
Cco05g2041 1154 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 950 1078 IPR029063 -
Cco05g2041 1154 Pfam Lysine methyltransferase 943 1097 IPR019410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2041 K20295 - - csv:101211005 1027.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1818 Cco-Chr2:31075538 Cco05g2041 Cco-Chr5:29480910 6.90E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g111 . Blo12g01018 . Bda03g00138 . . Bma04g00122 . . . Cma01g01725 . Car09g00296 . . . Cpe06g00247 . . . . . . . Cla05g01845 . . Cco05g2041 . Cmu05g1843 . Cone4ag1674 Cone7ag1279 . . Lsi04g01414 . . . . . . . . Bpe04g00120 . . Sed11g1825 Cmo01g01788 Cmo09g00348 Cma09g00348 . Car01g01338 . . Cpe02g00271 Bhi09g03133 Tan01g4607 Cmetu07g2154 . Hepe01g1897 Mch11g0428 . . . . . . . . . . . Cme07g00210
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006496 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38