Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2043 ATGTCGACAGTTTACGTATTAGAGCCGCCGACGAGGGGGAAGATCGTGTTGAATACCACCTGTGGACCGCTCGATATCGAGCTCTGGCCTAAGGAGGCTCCCAAAGCCGTCAGAAATTTCGTTCAGCTCTGTCTTGAAGGCTACTACGACAACACCATCTTTCACCGGATTATCAAGGACTTCATTGTTCAGGGCGGCGATCCTACCGGTAGCGGCACAGGTGGTGAAAGCATATATGGGGGTGTTTTCCCGGATGAGTTTCACTCACGGCTTAGATTCAAGCATAGGGGCTTAGTAGCTTGTGCAAATGCTGGGTCGCCTCATTCTAATGGAAGTCAGTTTTTTATAACCTTGAGTCGATGTGATGACCTTGACAAGAAGCACACAATTTTTGGAAAGGTCACTGGGGATTCTATATATAACCTAACAAGTTTGGGTGAGTTCGAAACTGACAAGGATGATCGTCCTGTGGATCCACCCAAGATAAAATCAATTGAGGTATTATGGAATCCATTTGACGACATTGTTCCAAGAGCACCTGCTAAGCCTGTGCCTGCATCCACCCTTGATTCTGAAAACAAGGACACCAAGAAGAAAGCTGTGAAAAAACTGAATTTACTATCGTTTGGGGAAGAAGCTGAAGAGGATGAGAAAGAATTGGCAGCTGTGAAGAAAAAAATTAAGAGCAGTCATGATGTTTTGGATGATCCACGTCTGCTAAAGGCAGAGATTCCAAGCAGTGAATTGAACTCGTCTGACAGTAAAAGAACGAGGGAGATGCAGCTATCTGTTAGAGAAACTTTAGCATCAAAGAAACAAGAGTCTTGCAGAGATTCAGATGCTGAAAATTCTAATCTCCCTCAATATAGTGATAGTGATGATGATGAAGCTAACTTCGATGCCCGAATGCGTCAACAGATATTGAGAAAAAGAACAGAGTTGGGAGATGCACCATCCCACAAGTCTAGAAATGGGACTTCTGACTCAAAGAATAATGAAGGATCCACTCGAAGGCCCAGTGCTGAGAACACTAAACGTGAGCAACCAAAGATTGAGAAATTATCTTTAAAGAAAAAGGGAATAGGATCTGAAGCGAGAGCAGAGCGAATGGCTAATGCTGACTCAGACTTGCAGTTATTGGGTGATGCTGAAAGAGGAAGACAGCTGCAAAAATTGAAGAAGAGAAGACTTCAAGGACGTGAAGATGAGGTTTTGGCAAAACTTGAGAAGTTCAAGAAAGGCTTTTCTGGAAAACCAGAACCTTCGAACGCTGAATCTGGGGGTGGTAATGATGATTTGTCAGACTGGAAATCTGTTAGGTTAAAATTCACACCAGAGCCTGGCAAGGACCGCATGTCACGTAGTGATGATCCAAATGACTACGTTGTGCATGACCCTCTTCTCGAGAAGGGGAAAGAGAAATTTAACAAAATGCAAGCCAAACAAAAACGACATCAAAACTACATTTCTCTATTCCCACGGAACATTGAAGATTTATTGAGGTTCATTATTGACAGCCATGCCCAATTGTTTCAGACACGCAAGGTTCTGAATTTGGAGAAAAAGAAACATTTTTATTCAGGGAGAGGGCTCTTGAAAGCATCATATTCTGTTCTGCTGTACCGCACATTCAGACTCGAAAAGTCTTCAACAACACATGTTCTTTCACCGAGTCGTTTCTGCCTTCAGACGCGCAAAGATAGTCGGCCAGCCATACTGCCAGGAAATTTACTCGTTTAA 1740 43.33 MSTVYVLEPPTRGKIVLNTTCGPLDIELWPKEAPKAVRNFVQLCLEGYYDNTIFHRIIKDFIVQGGDPTGSGTGGESIYGGVFPDEFHSRLRFKHRGLVACANAGSPHSNGSQFFITLSRCDDLDKKHTIFGKVTGDSIYNLTSLGEFETDKDDRPVDPPKIKSIEVLWNPFDDIVPRAPAKPVPASTLDSENKDTKKKAVKKLNLLSFGEEAEEDEKELAAVKKKIKSSHDVLDDPRLLKAEIPSSELNSSDSKRTREMQLSVRETLASKKQESCRDSDAENSNLPQYSDSDDDEANFDARMRQQILRKRTELGDAPSHKSRNGTSDSKNNEGSTRRPSAENTKREQPKIEKLSLKKKGIGSEARAERMANADSDLQLLGDAERGRQLQKLKKRRLQGREDEVLAKLEKFKKGFSGKPEPSNAESGGGNDDLSDWKSVRLKFTPEPGKDRMSRSDDPNDYVVHDPLLEKGKEKFNKMQAKQKRHQNYISLFPRNIEDLLRFIIDSHAQLFQTRKVLNLEKKKHFYSGRGLLKASYSVLLYRTFRLEKSSTTHVLSPSRFCLQTRKDSRPAILPGNLLV 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29498297 29504192 + CcPI632755_05g020430.1 Cco05g2043 179671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2043 579 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco05g2043 579 Gene3D - 2 181 IPR029000 -
Cco05g2043 579 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 4 182 IPR044666 GO:0071013(PANTHER)
Cco05g2043 579 MobiDBLite consensus disorder prediction 339 371 - -
Cco05g2043 579 MobiDBLite consensus disorder prediction 412 438 - -
Cco05g2043 579 MobiDBLite consensus disorder prediction 244 380 - -
Cco05g2043 579 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Cco05g2043 579 CDD cyclophilin_CeCYP16-like 8 178 - -
Cco05g2043 579 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 179 - -
Cco05g2043 579 MobiDBLite consensus disorder prediction 295 318 - -
Cco05g2043 579 SUPERFAMILY Cyclophilin-like 14 180 IPR029000 -
Cco05g2043 579 MobiDBLite consensus disorder prediction 319 338 - -
Cco05g2043 579 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco05g2043 579 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco05g2043 579 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco05g2043 579 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco05g2043 579 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco05g2043 579 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 16 167 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2043 K12737 - - csv:101211505 875.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2043 Cco-Chr5:29498297 Cco10g1866 Cco-Chr10:32255126 1.20E-38 dispersed
Cco05g2043 Cco-Chr5:29498297 Cco04g1512 Cco-Chr4:30551298 1.40E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g113 Blo01g01459 . Bda01g00628 . . Bpe02g00496 . Bma01g02208 . . Cma01g01723 . . . . . . . . . . . . . Cla05g01847 Cam05g1971 Cec05g1984 Cco05g2043 Clacu05g1964 Cmu05g1845 Cre05g1969 Cone4ag1675 Cone7ag1278 . . Lsi04g01412 . . . . . . . . . . . . Cmo01g01789 . . . Car01g01337 . . Cpe02g00272 Bhi09g03131 . . . Hepe01g1898 Mch11g0430 . . . . . . . . . . . Cme07g00208
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010515 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32