Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2046 ATGTTTAAAGCCAAGCGGCTTAAGAAAGAAAGTTCGAGTGGGATTGAATGTGTATCCACGCTCGAAGCAGCAGATAAGAAAAAGGGGCTAAGCCGGAGAACTTTTGAGAATGGGTTTTATGCTCTCACTGAGGTTTCTCTTCAAGTTCTTCTACCTGTTGCTATAGATTACAGCTTCCGATTGAGGAGCTTCGTCGGAGTTGGCGGCGTTGATTCGGATCGGGAGGAGGAAGAGAAGGCAGAAGAAGAGGTGCAAGGTTCCAGCCTGACGATGGAAAAAGTGGCGGCGGCTAAGAAGTTTATAGAGAACCATTACAGAGCTCAGATGAAGAACATTCAAGAACGGAAGGAGAGACGATGGATGTTGGAAAGAAAGTTAGCCTCATCGGATGTGCCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAACCATCATTGGCAGGGGGGCTTTTGGTGAGGTTCGATTATGTCGTGAGAAGAAATCTGGTGATATATATGCAATGAAAAAGTTGAAAAAATCTGAAATGCTGATGAGGGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCACTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCTGAATACTTGTATTTGATCATGGAATATCTACCAGGTGGAGATATGATGACTCTGCTTATGAGAGAAGACACATTGACTGAAAATGTAGCTAAATTTTACATTGCACAGAGTGTTCTAGCAATAGAATCTATCCACAGGCACAGCTATATTCACAGGGATATTAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAACTTTCTGATTTTGGTCTCTGTAAGCCATTGGATTCTTTAACCCTATCAGCACTACATGAAAATAAAGCCATGGATGATGAAAATCTGGCAGAACCCATGGATATAGATGATAATAGGAGCAGTTGGAAGAGTCCCAGTGAACAGCTACACCATTGGCAAATGAACCGGAGGAAATTGGCATTTTCAACTGTTGGAACACCAGATTATATAGCTCCAGAAGTATTGCTTAAAAAAGGATATGGAATGGAGTGTGACTGGTGGTCCCTCGGTGCAATTATGTATGAGATGCTTGTAGGTTACCCTCCATTTTACTCCGATGATCCAATCACCACCTGCAGAAAGATTGTTCATTGGAAAAATCACTTGAAGTTTCCAGAAGATGCTAAGTTAACATTTGAAGCAAAGGATCTCATTTGTAGGTTGCTGTGCGATGTTGAGCATAGACTTGGTACTGGAGGAGCATACCAAATTAAAGCCCATCCTTGGTTCAAAGATGTCGTCTGGGATAGGCTCTATGAAATGGAGGCAGCATTTAAGCCTGAAGTCAATGGAGAGCTCGATACCCAGAACTTTATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAACGTGGCTCAGGACCGTCAAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACATACAAGAACTTCGATGCTGTCAAAGGAGGGCTTCATGGATCACTTGATTCTCAGAGATTGTCAATGAAACAGCCTCCAATGGATGTATTACATGGCACCGGGGGAGACTACACAACCGAACTAATAGGCAATGAGGCTGAAATGCAGATGTTACAGTTTACAATACAAAATGGATATATAAAGCAAACAACAATGCCTGAAGAGTTTCTAATCATGAGAGACCAGCTAAGTAATCAAGCACTTGGTGAAAAAGTTCTCTTTGGTCAAAGTTCTTTTTTCTCCATTTCCCCTTCTTCATTAATGGCTAATTATCAAGGAACTGGATAG 1908 41.35 MFKAKRLKKESSSGIECVSTLEAADKKKGLSRRTFENGFYALTEVSLQVLLPVAIDYSFRLRSFVGVGGVDSDREEEEKAEEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHRHSYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENKAMDDENLAEPMDIDDNRSSWKSPSEQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNHLKFPEDAKLTFEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGGLHGSLDSQRLSMKQPPMDVLHGTGGDYTTELIGNEAEMQMLQFTIQNGYIKQTTMPEEFLIMRDQLSNQALGEKVLFGQSSFFSISPSSLMANYQGTG 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29528296 29534824 + CcPI632755_05g020460.1 Cco05g2046 179674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2046 635 PANTHER SERINE/THREONINE-PROTEIN KINASE 79 532 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cco05g2046 635 Pfam Protein kinase domain 164 313 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2046 635 Pfam Protein kinase domain 355 464 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2046 635 SMART pkinase_C_6 465 530 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2046 635 Pfam Protein kinase C terminal domain 483 528 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2046 635 CDD MobB_NDR_LATS-like 97 158 - -
Cco05g2046 635 FunFam Non-specific serine/threonine protein kinase 363 482 - -
Cco05g2046 635 Gene3D Phosphorylase Kinase; domain 1 126 246 - -
Cco05g2046 635 SMART serkin_6 163 464 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2046 635 SUPERFAMILY Protein kinase-like (PK-like) 160 510 IPR011009 -
Cco05g2046 635 ProSiteProfiles AGC-kinase C-terminal domain profile. 465 538 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2046 635 ProSiteProfiles Protein kinase domain profile. 163 464 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2046 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 282 294 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2046 635 FunFam Non-specific serine/threonine protein kinase 247 314 - -
Cco05g2046 635 ProSitePatterns Protein kinases ATP-binding region signature. 169 192 IPR017441 GO:0005524(InterPro)
Cco05g2046 635 FunFam Non-specific serine/threonine protein kinase 483 493 - -
Cco05g2046 635 Gene3D Transferase(Phosphotransferase) domain 1 363 484 - -
Cco05g2046 635 Gene3D Transferase(Phosphotransferase) domain 1 247 313 - -
Cco05g2046 635 CDD STKc_NDR_like 161 529 - -
Cco05g2046 635 FunFam Non-specific serine/threonine protein kinase 124 246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2046 Cco-Chr5:29528296 Cco06g0736 Cco-Chr6:8388269 2.60E-183 dispersed
Cco01g1885 Cco-Chr1:31344574 Cco05g2046 Cco-Chr5:29528296 8.20E-32 transposed
Cco04g2329 Cco-Chr4:36752094 Cco05g2046 Cco-Chr5:29528296 1.50E-180 transposed
Cco08g1780 Cco-Chr8:28918367 Cco05g2046 Cco-Chr5:29528296 4.30E-168 transposed
Cco03g1590 Cco-Chr3:30519130 Cco05g2046 Cco-Chr5:29528296 2.20E-223 wgd
Cco05g2046 Cco-Chr5:29528296 Cco08g1903 Cco-Chr8:30030380 6.70E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86867 PF00069 Pkinase 1.00E-42 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2046 K08790 - csv:101212228 1009.21