Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2047 ATGGCGGAGCTTATTCAGATGCCCTATGACGTCACTGTTCGTCTTGCACTGGCTTCTCTTGAACGGAATTTGTTGCCGGACGCCGTCGTAAGAAGGTTCACCCGCTTGTTACTCGCCTCTCGTCTTCGCTCCGGTTACAAGCCTTCCTCTCAACTTCAACTCTCCGAATTGCTTGATTTCGTGCACTCTTTAAGGGAAATGCCCATAGCAATTAAGACTGATAAACCAAAAGCTCAACACTACGAAGTACCGACCTCCTTCTTCAAGTTGGTTTTGGGAAAGAATCTCAAGTACAGTTGTTGCTATTTCAATGGCAAGTCAAGTACTTTGGAGGACGCTGAGGATGCAATGCTACAAATGTGTTGTGAGAGGACACAACTTAAGGATGGTCACACTGTTCTTGATGTTGGATGTGGCTGGGGGTCGCTCTCATTGTACATTGCCCAAAAGTACAAGAATTGCACAATAACAGGAATTTGCAATTCGACCACGCAGAAAGCTTACATCGAGGAGCAATGCCGGGATCTCCAACTGCATAATCTCAACATCATAGTTGCAGACATCAGCACATTTGAAATGGAAGCTGAATATGATAGAATATTTTCCATTGAAATGTTTGAGCATATGAAGAACTACAAGGATCTTCTCAAGAAAATATCAGGTTGGATGAAACAGGACAGTCTCCTATTTGTTCATCATTTTTGCCATAAAGTTTTTGCCTATCACTTTGAGGATGTAAATGAAGATGATTGGATTACTAGATACTTCTTTGAAGGTGGTACGATGCCTTCTGCAAATCTACTTCTCTATTTCCAGGATGACGTGTCAATCATAGACCATTGGCTTGTGAATGGCAAGCACTATTCTCAAACAAGTGAAGAGTGGCTCAAAAGAATGGACGAGAATGCAGCTTTAATAAAACCAATCATGGCAACTACTTATGGCAAGGACTCTGCTGTAAAGTGGACTGTTTATTGGAGAACATTCTTTATTGCTGTTGCTGAGTTATTTGGATACAACAATGGGGAAGAATGGATGAGTAGAGGTGCTGATATTTGTTTCGTTAGTCATACTGTTCAAACTGCGTTAGATTGTTGCCACACCACGAGGGGTGAGCATATTAAATCGAAGTTCGATTGGTTTAAAGTTATATATGGATTCGAGTTGCAAAACCGACTTGTTGGTTGGTCAGGCCCTAAGGCCTTAAAAATGACGGAGCTTATTCAGATGGCCTACGCCGCGGCCGCATTGGCTTCTCTTGAACGGAATTTGCTGCCGGACGCCGTCATAAGAAGGCTGACCCGCTTGTCACTCGCTTCTTGTCTTCGCTCCGGTTACAAGCCTTCCTCTCAACTTCAACTCTCCATTTCTCGAGTACATGAGCGGAAGGAAGACAGTAGTTGTACACAAGTGACCGACATTGACATTTATTATTTCAATGACAAGTCAAGTAGCTCGGAGGACGCGGAAGAGGCAATGCTACAATTGTATTGTGAATGGTCAGAACTGAAGGATGGTGACACCATTCTTGATGTTGGATGTGGCTGGGGTCGCTCTCATTGTATATTGAAGAATTGCAAGGATGGCGTGTGTCAATTATTCTTTCAAGTTTCACCATCGATGGATCGATTCAGAGGTCAACCTCGGCTCCCGAAATTTGCCGTTCCGAAACGATACGATATCAGCCTTAAACCGGACCTTTGCCTCTGTAAATTCTCTGGTTCTGTTGCAATCGATATCGATATCCTTTCCGATACTCGATTTCTAGTACTCAACGCCGCCGACCTTCATGTCCATGATGCTTCTGTCTCCTTCACCAATCGGAACTCCTCCAAGGTTATCCAGCCTTCAAGCATTCAAGCTTGTGAAGAGAACCAAATTTTAGTTTTGGAGTTTGCACAGACGCTACCAATTGGGTTAGGAACATTGAGTATGGACTTCGAAGGAATCTTGAATGATAAAATGAAAGGATTCTATAGAAGCACTTATGAGCACAACGGTGAGAAGAAAAACATGGCTGTTACACAATTTGAACCAGTTGATGCTAGACGTTGCTTCCCTTGCTGGGATGAACCTGCTTTTAAGGCTACATTCAAGATCACGTTAGATGTACCATCTGAACTAATAGCACTTTCCAACATGCCAATTATTGAAGAAAAAGTGAATGGCCATTTGAAGACGGTTTCATATCAAGAATCACCAATTATGTCCACATATTTAGTGGCCATTGTAGTTGGTTTATTTGATTATGTGGAAGATCATACAACTGATGGGGTCAAAGTTCGTGTATACTGTCAAGTTGGAAAGGCAAATCAAGGAAAATTTGCATTACATGTCGCTGTTAAGACTCTTGACCTATACAAGGACTATTTTGCTGTGCCATACTCTCTGCCAAAACTGGACATGATTGCAATTCCTGACTTTGCTGCTGGGGCCATGGAAAACTATGGTTTAGTTACCTATCGTGAGACTGCTTTACTTTATGATGATCAGCACTCTGCAGCTGCTAACAAACAGAGGGTGGCAACTGTTGTGGCTCATGAACTTGCACACCAATGGTTTGGCAACCTTGTAACTATGGAGTGGTGGACACATTTGTGGCTGAATGAGGGATTTGCAACATGGGTGAGTTATTTAGCTACTGATAGCTTGTTTCCAGAGTGGAAAGTATGGAATCAATTTCTTGAAGAATCAAACCATGGTCTTACTTTGGATGGGCTTGCTGAATCACATCCAATTGAGGTTGAGATAAATCATGCCAGTGAGGTTGATGAAATATTTGATGCAATTAGCTACAGAAAAGGTGCATCTGTTATTCGAATGTTACAAAGCTATCTCGGTGCTGAGTGTTTTCAGAAATCACTTGCTTCATACATAAAAAAGCACAGTTGTTCCAATACAAAGACTGAAGACTTATGGGCTGCTCTAGAGGAGGGATCTGGTGAACCTGTGAACAACTTAATGAGTTCCTGGACCAAGCAACAAGGATATCCTGTTGTCACTGTCAAAGTGAAAGATGAGAAATTGGTGTTTGAGCAGTCAAGATTTTTGTTGAGTGGTTCCTGTGGAGAGGGGCAATGGATTGTTCCCGTAACATTGTGTTGTGGTTCTTATGATGTGCGGAAAAACTTTCTGCTGCAAACAAAGACCGAATCTGTAGACATCAAGGAGTTCCTTGGTTGCTCCATCAGCAAATGCTCTGGTGGAAATGATAAATGTTGTGATTGGATAAAGCTTAATGTTGATCAGACTGGCTTTTACCGGGTGAAGTATGATGAAGATCTTGCAGCTAAGCTTAGGAATGCAATAGAGAAAAATCATTTGACTGCAACGGACAGATTTGGTATTTTGGATGATGCATTTGCCCTTTCTATGGCTTGCCAGCAATCAGTTACCTCTTTGCTTACCTTGATGGGTGCTTATAGAGAGGAACTTGACTACACTGTGTTATCGAATTTGATCAGTATAAGCTACAAACTCGAAAGAATTGCAGCTGATGCAGTTCCTGAGTTACTGGACAACCTCAGGCAATTTTTCACCAACATTTTCCAATATGCAGCAGAAAAACTTGGATGGGATCCCAAACCAGACGAAAGCCATCTTGATGCAATGTTGAGAGGAGAAATTTTGACTGCTCTTGCTCTGTTCGGTCATGAGCAGACAATAAAAGAAGCAAATAGGCGATGTCTTGCATTCTTAGATGACAGAAGTACGCCACTACTCCCACCTGATATTAGGAAGGCGGCATATGTGGCTGTAATGCAAACAGTCAATGCTTCAAACAGATCTGGTTACGAATCACTTTTAAGAATTTACAGAGAGACAGATCTTAGTCAGGAGAAAACACGCGTTTTAAGTTCCTTGGCATCTTGTCCAGATCCTAACATCATTCTTGAAGTTCTCAACTTTTTATTGTCGTCTGAGGTTCGTAGTCAAGATGCTGTTTTTGGACTAGGTGTTAATTGGCAAGCACGTGAAACAGCTTGGACATGGCTGAAGACAAAGTGGGAAGAAATCTCAAAAATCTTCGACTCTGGGTTTCTGATTGGACGCTTTGTCAGTGCCACAGTCTCCCCGTTTGCCTCGTTTGAAAAGGCTAAGGAAGTTGAGGAGTTCTTTGCAAGCCGTGTTAAGCCATCGATGGCCCGAACATTGAAGCAAAGCATCGAGCGTGTTCACATCAATTCGAGATGGGTTCAGAGCGTCCAGAAGGAGCATGCTCTACCTGAAGCAATAAAAGAGCTTGCTTGGAGGCGATATTAG 4263 42.46 MAELIQMPYDVTVRLALASLERNLLPDAVVRRFTRLLLASRLRSGYKPSSQLQLSELLDFVHSLREMPIAIKTDKPKAQHYEVPTSFFKLVLGKNLKYSCCYFNGKSSTLEDAEDAMLQMCCERTQLKDGHTVLDVGCGWGSLSLYIAQKYKNCTITGICNSTTQKAYIEEQCRDLQLHNLNIIVADISTFEMEAEYDRIFSIEMFEHMKNYKDLLKKISGWMKQDSLLFVHHFCHKVFAYHFEDVNEDDWITRYFFEGGTMPSANLLLYFQDDVSIIDHWLVNGKHYSQTSEEWLKRMDENAALIKPIMATTYGKDSAVKWTVYWRTFFIAVAELFGYNNGEEWMSRGADICFVSHTVQTALDCCHTTRGEHIKSKFDWFKVIYGFELQNRLVGWSGPKALKMTELIQMAYAAAALASLERNLLPDAVIRRLTRLSLASCLRSGYKPSSQLQLSISRVHERKEDSSCTQVTDIDIYYFNDKSSSSEDAEEAMLQLYCEWSELKDGDTILDVGCGWGRSHCILKNCKDGVCQLFFQVSPSMDRFRGQPRLPKFAVPKRYDISLKPDLCLCKFSGSVAIDIDILSDTRFLVLNAADLHVHDASVSFTNRNSSKVIQPSSIQACEENQILVLEFAQTLPIGLGTLSMDFEGILNDKMKGFYRSTYEHNGEKKNMAVTQFEPVDARRCFPCWDEPAFKATFKITLDVPSELIALSNMPIIEEKVNGHLKTVSYQESPIMSTYLVAIVVGLFDYVEDHTTDGVKVRVYCQVGKANQGKFALHVAVKTLDLYKDYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLATDSLFPEWKVWNQFLEESNHGLTLDGLAESHPIEVEINHASEVDEIFDAISYRKGASVIRMLQSYLGAECFQKSLASYIKKHSCSNTKTEDLWAALEEGSGEPVNNLMSSWTKQQGYPVVTVKVKDEKLVFEQSRFLLSGSCGEGQWIVPVTLCCGSYDVRKNFLLQTKTESVDIKEFLGCSISKCSGGNDKCCDWIKLNVDQTGFYRVKYDEDLAAKLRNAIEKNHLTATDRFGILDDAFALSMACQQSVTSLLTLMGAYREELDYTVLSNLISISYKLERIAADAVPELLDNLRQFFTNIFQYAAEKLGWDPKPDESHLDAMLRGEILTALALFGHEQTIKEANRRCLAFLDDRSTPLLPPDIRKAAYVAVMQTVNASNRSGYESLLRIYRETDLSQEKTRVLSSLASCPDPNIILEVLNFLLSSEVRSQDAVFGLGVNWQARETAWTWLKTKWEEISKIFDSGFLIGRFVSATVSPFASFEKAKEVEEFFASRVKPSMARTLKQSIERVHINSRWVQSVQKEHALPEAIKELAWRRY 1420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29537725 29557536 - CcPI632755_05g020470.1 Cco05g2047 179675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2047 1420 CDD M1_APN-Q_like 558 993 IPR034016 -
Cco05g2047 1420 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 755 1002 - -
Cco05g2047 1420 FunFam Cation-transporting ATPase 69 348 - -
Cco05g2047 1420 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 549 746 IPR042097 -
Cco05g2047 1420 Gene3D Vaccinia Virus protein VP39 71 347 IPR029063 -
Cco05g2047 1420 Gene3D Vaccinia Virus protein VP39 467 531 IPR029063 -
Cco05g2047 1420 FunFam Aminopeptidase 541 748 - -
Cco05g2047 1420 PRINTS Membrane alanyl dipeptidase (M1) family signature 808 818 IPR001930 GO:0006508(InterPro)
Cco05g2047 1420 PRINTS Membrane alanyl dipeptidase (M1) family signature 863 875 IPR001930 GO:0006508(InterPro)
Cco05g2047 1420 PRINTS Membrane alanyl dipeptidase (M1) family signature 730 745 IPR001930 GO:0006508(InterPro)
Cco05g2047 1420 PRINTS Membrane alanyl dipeptidase (M1) family signature 683 698 IPR001930 GO:0006508(InterPro)
Cco05g2047 1420 PRINTS Membrane alanyl dipeptidase (M1) family signature 844 859 IPR001930 GO:0006508(InterPro)
Cco05g2047 1420 FunFam Aminopeptidase 1094 1411 - -
Cco05g2047 1420 PANTHER PROTEASE M1 ZINC METALLOPROTEASE 503 1405 IPR050344 GO:0005737(PANTHER)|GO:0006508(PANTHER)|GO:0008270(PANTHER)|GO:0042277(PANTHER)|GO:0043171(PANTHER)|GO:0070006(PANTHER)
Cco05g2047 1420 FunFam Aminopeptidase 750 996 - -
Cco05g2047 1420 Pfam Peptidase family M1 domain 775 991 IPR014782 GO:0008237(InterPro)|GO:0008270(InterPro)
Cco05g2047 1420 Pfam ERAP1-like C-terminal domain 1076 1393 IPR024571 -
Cco05g2047 1420 Pfam Mycolic acid cyclopropane synthetase 77 309 - -
Cco05g2047 1420 Pfam Mycolic acid cyclopropane synthetase 478 518 - -
Cco05g2047 1420 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 79 345 IPR029063 -
Cco05g2047 1420 CDD AdoMet_MTases 132 234 - -
Cco05g2047 1420 Pfam Peptidase M1 N-terminal domain 555 740 IPR045357 -
Cco05g2047 1420 Gene3D - 1093 1407 - -
Cco05g2047 1420 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 476 519 IPR029063 -
Cco05g2047 1420 Gene3D - 997 1091 - -
Cco05g2047 1420 Gene3D tricorn interacting facor f3 domain 545 748 IPR042097 -
Cco05g2047 1420 Gene3D Neutral Protease Domain 2 749 996 IPR027268 -
Cco05g2047 1420 FunFam Aminopeptidase 997 1091 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2047 K08776 - - csv:101215753 1629.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2047 Cco-Chr5:29537725 Cco07g1462 Cco-Chr7:28740997 6.30E-246 dispersed
Cco05g2047 Cco-Chr5:29537725 Cco05g2048 Cco-Chr5:29564683 1.50E-146 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g121 . . Bda01g00631 . . Bpe02g00499 . Bma01g02205 . . Cma01g01716 . . . . . . . . . . . . . Cla05g01853 . Cec05g1989 Cco05g2047 . Cmu05g1850 Cre05g1975 Cone4ag1682 Cone7ag1599 . . Lsi04g01406 . . . . . . . . . . . . Cmo01g01795 . . . Car01g01332 . . Cpe02g00277 Bhi09g03119 . . . . . . . . . . . . . . . . Cme07g00202
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001781 2 8 2 2 1 2 2 2 3 3 2 2 2 3 2 2 2 2 2 2 3 2 2 2 2 2 3 1 2 2 69