Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2049 ATGAAAACTTGGCTGAAGGTTATCAAATTCCAAAGTTCAACCTCCTTCATCTTTTGTTGGGATCAGCGACCTTCTCGAGTATCGACTCTCGACCGGAGTTCGGAGTGCTCCTTCCGTGGAGTTATGGGGCGCGTTAACAACAGAACCAACGCATCGGCGTCGGGAACTGCCGGTAAATCAGAAAGTCGGCGGATGAGCAACGCCGACCGCTCGGCATACTTCGCAAGGAGAGAGGCGGCGAAGATATTGCGGCGTGTTCTTGAGGGAGATGCTCAGCGTCGAGCCGTCGCCTCCATCAAGTCACTCGTTTATGCTCCGTCTGTTCGGAATAAGAAGGGCACATTCGCTCTTGTCTGCAAGACACTCAAATACCTCCCTGTAATCAAGGATGTACTTGAGGCTGCTGATTTGTTAAGCAATAAATGGAAGAGGCAGAAGGAATTAATTTATGTCATCATGTATGATATCCTTCTAGGCCAGAAAACTCATTTAGCTGGCGATGCAGAGAAGTTTCTCATGCGGCAGCAAAGTGCTTTACAATCTGTAGTTACACAGATTCTGTCAAAGAAAAAAGCAAACAATATTGAAGATTTAATAGCTCATGGCGATGATCCTGGTGTTTTAAGGCCTCGTTTTATCCGTGTGAATACTTTGAAGATGGATGTCCACACAGCAATAAAAGAATTAGGCAAAAGATATGCAGTTCAGAAGGATGACATGGTTCCCGAGCTCTTGGTACTTCCTCCAGGCAGTGATTTACATGATCATCCTCTGGTTGCAGATGGAAGCATCTTCATGCAAGGGAAGGCTAGTTCTATGGTTGCAGTAGCCCTTGATCCCAAGCCAGGATGGGAAGTCCTTGATGCATGTTCAGCTCCGGGCAACAAAACTGTCCACCTCGCCTCCCTCATGAATGGAAAAGGAAGGGTCATTGCATGTGAATTGAATGAAAACAGGGTCAGACGCTTACAAGATACTATCAAACTATCTGGCGCGTCTAATATAGAAGTTTTGCATGGGGATTTCCTTAATCTTAATCCAGAAGATCCTTCATTATCCAAAGTCCGTGCCATTCTTTTGGATCCTTCTTGCTCTGGATCTGGGACTGCAGCTGCTAGATTAGATCATTTGCTTCCGTCACATGTTGAAGGGAAAACCTCTGAGGATGACCTTGAACGACTGAACAAACTCGCTGCCTTTCAGAAAAAGGCTCTAGCACATGCATTTTCCTTCCCAGCCGTAGAGAGAATTGTTTACAGCACTTGTTCCATTCATCAAGTTGAAAACGAAGATGTCGTTCAGTCATTATTACCTCTTGCTGAATCGTATGGTTTTCAACTGGAAACTCCTTTCCCACAGTGGCAGCGGCGAGGTCTCCCAGTTTTTGCGGGTGCTAACCATTTACTTCGAACCGATCCTGTTGAAGACAAAGAAGGGTTCTTCATAGCTCTATTTAAGAAGAAGCAGAACACAACGCACCCATCTTCCCGAATTTCATATAGAGATAAAAGCTCAAGAAATCGTGGTGGAAATATCAGAAACAGTTGGCCAGTAGCCTGCCCTCCAACCAAGATATCCAAACTGTGGTTGTGTACACTTTCGACAAGGACACGATGGAGAAAGAACTACACTTCATCCAAAACTAGAACAAGAACTTGA 1659 45.21 MKTWLKVIKFQSSTSFIFCWDQRPSRVSTLDRSSECSFRGVMGRVNNRTNASASGTAGKSESRRMSNADRSAYFARREAAKILRRVLEGDAQRRAVASIKSLVYAPSVRNKKGTFALVCKTLKYLPVIKDVLEAADLLSNKWKRQKELIYVIMYDILLGQKTHLAGDAEKFLMRQQSALQSVVTQILSKKKANNIEDLIAHGDDPGVLRPRFIRVNTLKMDVHTAIKELGKRYAVQKDDMVPELLVLPPGSDLHDHPLVADGSIFMQGKASSMVAVALDPKPGWEVLDACSAPGNKTVHLASLMNGKGRVIACELNENRVRRLQDTIKLSGASNIEVLHGDFLNLNPEDPSLSKVRAILLDPSCSGSGTAAARLDHLLPSHVEGKTSEDDLERLNKLAAFQKKALAHAFSFPAVERIVYSTCSIHQVENEDVVQSLLPLAESYGFQLETPFPQWQRRGLPVFAGANHLLRTDPVEDKEGFFIALFKKKQNTTHPSSRISYRDKSSRNRGGNIRNSWPVACPPTKISKLWLCTLSTRTRWRKNYTSSKTRTRT 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29575189 29580088 + CcPI632755_05g020490.1 Cco05g2049 179677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2049 552 PRINTS RNA (C5-cytosine) methyltransferase signature 414 430 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cco05g2049 552 PRINTS RNA (C5-cytosine) methyltransferase signature 356 368 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cco05g2049 552 PRINTS RNA (C5-cytosine) methyltransferase signature 287 297 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cco05g2049 552 PRINTS RNA (C5-cytosine) methyltransferase signature 258 272 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cco05g2049 552 PRINTS RNA (C5-cytosine) methyltransferase signature 470 487 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cco05g2049 552 MobiDBLite consensus disorder prediction 493 515 - -
Cco05g2049 552 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 211 488 IPR029063 -
Cco05g2049 552 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 201 488 IPR001678 GO:0008168(InterPro)
Cco05g2049 552 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 75 491 IPR023267 GO:0001510(InterPro)|GO:0001510(PANTHER)|GO:0005730(PANTHER)|GO:0008173(InterPro)|GO:0070475(PANTHER)
Cco05g2049 552 Pfam NOL1/NOP2/Sun domain family member 5, N-terminal domain 114 199 IPR048889 -
Cco05g2049 552 CDD AdoMet_MTases 286 374 - -
Cco05g2049 552 Pfam 16S rRNA methyltransferase RsmB/F 276 485 IPR049560 -
Cco05g2049 552 Gene3D Sun protein; domain 3 230 266 - -
Cco05g2049 552 Pfam NOL1/NOP2/Sun domain family member 5, ferredoxin-like domain 236 267 IPR049561 -
Cco05g2049 552 Gene3D Vaccinia Virus protein VP39 267 494 IPR029063 -
Cco05g2049 552 FunFam Methyltransferase NSUN5, putative 267 493 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2049 K15264 - - csv:101212715 901.738
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g124 Blo01g01455 . . . . . . Bma01g02203 . . . . Car09g00303 . . . Cpe06g00251 . . . . . . . Cla05g01855 Cam05g1978 Cec05g1991 Cco05g2049 Clacu05g1970 Cmu05g1852 Cre05g1977 . Cone7ag1601 . . Lsi04g01403 . . . . . . . . . . . . . Cmo09g00354 Cma09g00354 . . . . Cpe02g00278 Bhi09g03108 . . . Hepe01g1904 Mch11g0437 . . . . . . . . . . . Cme07g00198
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008710 0 4 1 1 0 1 1 1 1 1 1 1 2 1 0 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 33