Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2052 ATGGAGGTAGCCAAAATGGGATTGGACCCAATATTCCTGAACGCCCTCCACGACCTTCTGGACTTCACGGACGAGCCAGGACAGAGCAGTCACCACGCGCCGTCACGCGCCTACGTGAGGGACGCAAAAGCGATGGCGGCAACTCCGGCGGACGTGGTGGAATATCCAAACTCGTACCAATTCACCATCGACATGCCTGGCCTTAAACCAGACCAAATCAAGGTGAAAATAGAGGACAACCAGTTGGTTGTGAGCGGCGAGAGGAAGAGGGAAAGTGAGAAAGTAAAGGAAGGCAAATTTGTGAGAATGGAGAGGAGGCTAGGAAAGTACTTGAAGAAATTTGACCTGCCGGAAACCGCCGATGCCGACAAGGTGTCCGCGGCGTACCAGGACGGAGTGCTGTCGGTAACGGTGGAGAAGAAGCCGCCGCCGGAGCCCAAAAAGGCTAAGAGTATTGAGGTTCATGTTGCGTGA 474 54.22 MEVAKMGLDPIFLNALHDLLDFTDEPGQSSHHAPSRAYVRDAKAMAATPADVVEYPNSYQFTIDMPGLKPDQIKVKIEDNQLVVSGERKRESEKVKEGKFVRMERRLGKYLKKFDLPETADADKVSAAYQDGVLSVTVEKKPPPEPKKAKSIEVHVA 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29583102 29583575 - CcPI632755_05g020520.1 Cco05g2052 179680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2052 157 SUPERFAMILY HSP20-like chaperones 32 149 IPR008978 -
Cco05g2052 157 CDD ACD_sHsps-like 51 138 - -
Cco05g2052 157 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 41 155 IPR002068 -
Cco05g2052 157 Gene3D - 11 155 IPR008978 -
Cco05g2052 157 FunFam 17.3 kDa class II heat shock protein-like 11 156 - -
Cco05g2052 157 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 28 152 IPR031107 GO:0006457(PANTHER)|GO:0009408(PANTHER)|GO:0009651(PANTHER)|GO:0042542(PANTHER)|GO:0043621(PANTHER)|GO:0051082(PANTHER)|GO:0051259(PANTHER)
Cco05g2052 157 MobiDBLite consensus disorder prediction 137 157 - -
Cco05g2052 157 Pfam Hsp20/alpha crystallin family 52 155 IPR002068 -
Cco05g2052 157 MobiDBLite consensus disorder prediction 141 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2052 K13993 - - csv:101213192 285.804
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2052 Cco-Chr5:29583102 Cco11g0659 Cco-Chr11:7185326 1.10E-13 dispersed
Cco09g2420 Cco-Chr9:38436986 Cco05g2052 Cco-Chr5:29583102 3.20E-07 dispersed
Cco05g2050 Cco-Chr5:29580666 Cco05g2052 Cco-Chr5:29583102 6.20E-43 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g127 . Blo12g01022 . . . Bpe02g00501 . . . . . . Car09g00304 . . . Cpe06g00252 . . . . . . . Cla05g01856 Cam05g1981 Cec05g1994 Cco05g2052 Clacu05g1973 Cmu05g1855 Cre05g1980 . . . . . . . . . . . . Bpe14g00274 . . . . . Cmo09g00355 Cma09g00355 . . . . Cpe02g00279 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74