Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2054 | ATGTCTAAAAATGACCTCGACACGGTGATGGACACGTGTCCACCCTCCTCGATCCTCAAAACCCTCGCGAACCTCCATAAATCTTGTCCTTTCTTCCTACTTGAGCTCTTTATTTCATTTCCTTCGCCTCCATTTTCGCTCTTAACTTTCCACTCTGCTTTCTGGGTTTTCTCCTTTCCAATCAAGGAGATTTTCTGGATTTGGGTTTGTGTTTGTTTGTTGCTGAAATCACCTGATTTCATTTTCTTCCCCCCTTCGCTGAATTGGGTTGTGACTTGTGAGAAGAAACCCCATGATCGTATTGGATTTCGTGTTTTAGAACTGGCTAAGATGAGCCTGGATGCAGCAGAGGATGAATCAACCTCTGAAATTCATATTCCAGCAGAGATTGATTGGGATATGTTAGACAAATCCAAATTCTTTTTTCTGGGTGCTGCTTTATTTTCGGGTGTATCAACTGCTCTTTATCCAGTTGTTCTTTTGAAAACTCGACTTCAGGTTTCAGCTACCAAGGTATCATGCTTTAAAATGTCATACTCTATCATGCGTCATGAAGGCTTGAGAGGGTTTTACAGAGGATTTGGAACCTCTTTAATGGGAACTATCCCAGCTCGAGCCTTTTACATGGCAGCTCTTGAAGTTACCAAGAGTGGCGTTGGAAGTGCAACGATTAAGCTAGGCTTTTCAGATACCACAGCCATGGCTATAGCTAATGCAGCTGCAGGGTTGAGCTCAGCCATGGCTGCACAATTGGTTTGGACTCCAATAGATGTTGTAAGCCAAAGACTAATGGTTCAGGGCTGCAATATCAGTGCTAAAAACAGCGTTTCTAATCTTAATTCTTGCGTCTATAAAAATGGTATTGACGCTTTTAGAAAGATCATTTATGCTGATGGTTTGCGAGGATTATATAGGGGATTTGGGATTTCAATATTGACATATGCTCCATCAAATGCAGTTTGGTGGACTTCTTACTCTGTTGCTCACAGACTCATTTGGAGTGGTCTAGGCTACTACACAAGTAAGAAGGATGAAGGTTGTATTAATGGTGGCTATGGCTTTAAATCAGATTCTAAGGCAACGGTGGCAGTTCAGGGGTTGAGTGCAGGCTTGGCCAGTGGAGTTTCTGCTATCATAACAATGCCTCTGGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAATGGCCAAAGACGCCCTCTAACAGCATTGCAGACCATAAGGAACTTGATTAAGGAAGGTGGACTGAATGCTTGTTACAGAGGGCTTGGTCCAAGGTGGGCTTCAATGGCCATGTCGGCGACCACCATGATCACAACCTATGAGTTTCTCAAACGACTGTCTACTAAGAACCAAGATTGTTTGAGCAGATGA | 1383 | 42.95 | MSKNDLDTVMDTCPPSSILKTLANLHKSCPFFLLELFISFPSPPFSLLTFHSAFWVFSFPIKEIFWIWVCVCLLLKSPDFIFFPPSLNWVVTCEKKPHDRIGFRVLELAKMSLDAAEDESTSEIHIPAEIDWDMLDKSKFFFLGAALFSGVSTALYPVVLLKTRLQVSATKVSCFKMSYSIMRHEGLRGFYRGFGTSLMGTIPARAFYMAALEVTKSGVGSATIKLGFSDTTAMAIANAAAGLSSAMAAQLVWTPIDVVSQRLMVQGCNISAKNSVSNLNSCVYKNGIDAFRKIIYADGLRGLYRGFGISILTYAPSNAVWWTSYSVAHRLIWSGLGYYTSKKDEGCINGGYGFKSDSKATVAVQGLSAGLASGVSAIITMPLDTIKTRLQVLDGEENGQRRPLTALQTIRNLIKEGGLNACYRGLGPRWASMAMSATTMITTYEFLKRLSTKNQDCLSR | 460 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 29585425 | 29587072 | + | CcPI632755_05g020540.1 | Cco05g2054 | 179682 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2054 | 460 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 136 | 218 | IPR018108 | - | |
Cco05g2054 | 460 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 233 | 331 | IPR018108 | - | |
Cco05g2054 | 460 | PRINTS | Mitochondrial carrier protein signature | 191 | 209 | IPR002067 | GO:0055085(InterPro) | |
Cco05g2054 | 460 | PRINTS | Mitochondrial carrier protein signature | 150 | 168 | IPR002067 | GO:0055085(InterPro) | |
Cco05g2054 | 460 | PRINTS | Mitochondrial carrier protein signature | 242 | 264 | IPR002067 | GO:0055085(InterPro) | |
Cco05g2054 | 460 | Gene3D | Mitochondrial carrier domain | 137 | 458 | IPR023395 | - | |
Cco05g2054 | 460 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 360 | 450 | IPR018108 | - | |
Cco05g2054 | 460 | SUPERFAMILY | Mitochondrial carrier | 133 | 447 | IPR023395 | - | |
Cco05g2054 | 460 | Pfam | Mitochondrial carrier protein | 360 | 453 | IPR018108 | - | |
Cco05g2054 | 460 | Pfam | Mitochondrial carrier protein | 149 | 218 | IPR018108 | - | |
Cco05g2054 | 460 | Pfam | Mitochondrial carrier protein | 236 | 332 | IPR018108 | - | |
Cco05g2054 | 460 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J | 116 | 456 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2054 | Cco-Chr5:29585425 | Cco11g0501 | Cco-Chr11:5245461 | 2.00E-68 | dispersed | |
Cco05g2054 | Cco-Chr5:29585425 | Cco09g0080 | Cco-Chr9:732778 | 1.10E-133 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2054 | K15121 | - | csv:101213436 | 651.744 |