Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2054 ATGTCTAAAAATGACCTCGACACGGTGATGGACACGTGTCCACCCTCCTCGATCCTCAAAACCCTCGCGAACCTCCATAAATCTTGTCCTTTCTTCCTACTTGAGCTCTTTATTTCATTTCCTTCGCCTCCATTTTCGCTCTTAACTTTCCACTCTGCTTTCTGGGTTTTCTCCTTTCCAATCAAGGAGATTTTCTGGATTTGGGTTTGTGTTTGTTTGTTGCTGAAATCACCTGATTTCATTTTCTTCCCCCCTTCGCTGAATTGGGTTGTGACTTGTGAGAAGAAACCCCATGATCGTATTGGATTTCGTGTTTTAGAACTGGCTAAGATGAGCCTGGATGCAGCAGAGGATGAATCAACCTCTGAAATTCATATTCCAGCAGAGATTGATTGGGATATGTTAGACAAATCCAAATTCTTTTTTCTGGGTGCTGCTTTATTTTCGGGTGTATCAACTGCTCTTTATCCAGTTGTTCTTTTGAAAACTCGACTTCAGGTTTCAGCTACCAAGGTATCATGCTTTAAAATGTCATACTCTATCATGCGTCATGAAGGCTTGAGAGGGTTTTACAGAGGATTTGGAACCTCTTTAATGGGAACTATCCCAGCTCGAGCCTTTTACATGGCAGCTCTTGAAGTTACCAAGAGTGGCGTTGGAAGTGCAACGATTAAGCTAGGCTTTTCAGATACCACAGCCATGGCTATAGCTAATGCAGCTGCAGGGTTGAGCTCAGCCATGGCTGCACAATTGGTTTGGACTCCAATAGATGTTGTAAGCCAAAGACTAATGGTTCAGGGCTGCAATATCAGTGCTAAAAACAGCGTTTCTAATCTTAATTCTTGCGTCTATAAAAATGGTATTGACGCTTTTAGAAAGATCATTTATGCTGATGGTTTGCGAGGATTATATAGGGGATTTGGGATTTCAATATTGACATATGCTCCATCAAATGCAGTTTGGTGGACTTCTTACTCTGTTGCTCACAGACTCATTTGGAGTGGTCTAGGCTACTACACAAGTAAGAAGGATGAAGGTTGTATTAATGGTGGCTATGGCTTTAAATCAGATTCTAAGGCAACGGTGGCAGTTCAGGGGTTGAGTGCAGGCTTGGCCAGTGGAGTTTCTGCTATCATAACAATGCCTCTGGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAATGGCCAAAGACGCCCTCTAACAGCATTGCAGACCATAAGGAACTTGATTAAGGAAGGTGGACTGAATGCTTGTTACAGAGGGCTTGGTCCAAGGTGGGCTTCAATGGCCATGTCGGCGACCACCATGATCACAACCTATGAGTTTCTCAAACGACTGTCTACTAAGAACCAAGATTGTTTGAGCAGATGA 1383 42.95 MSKNDLDTVMDTCPPSSILKTLANLHKSCPFFLLELFISFPSPPFSLLTFHSAFWVFSFPIKEIFWIWVCVCLLLKSPDFIFFPPSLNWVVTCEKKPHDRIGFRVLELAKMSLDAAEDESTSEIHIPAEIDWDMLDKSKFFFLGAALFSGVSTALYPVVLLKTRLQVSATKVSCFKMSYSIMRHEGLRGFYRGFGTSLMGTIPARAFYMAALEVTKSGVGSATIKLGFSDTTAMAIANAAAGLSSAMAAQLVWTPIDVVSQRLMVQGCNISAKNSVSNLNSCVYKNGIDAFRKIIYADGLRGLYRGFGISILTYAPSNAVWWTSYSVAHRLIWSGLGYYTSKKDEGCINGGYGFKSDSKATVAVQGLSAGLASGVSAIITMPLDTIKTRLQVLDGEENGQRRPLTALQTIRNLIKEGGLNACYRGLGPRWASMAMSATTMITTYEFLKRLSTKNQDCLSR 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29585425 29587072 + CcPI632755_05g020540.1 Cco05g2054 179682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2054 460 ProSiteProfiles Solute carrier (Solcar) repeat profile. 136 218 IPR018108 -
Cco05g2054 460 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 331 IPR018108 -
Cco05g2054 460 PRINTS Mitochondrial carrier protein signature 191 209 IPR002067 GO:0055085(InterPro)
Cco05g2054 460 PRINTS Mitochondrial carrier protein signature 150 168 IPR002067 GO:0055085(InterPro)
Cco05g2054 460 PRINTS Mitochondrial carrier protein signature 242 264 IPR002067 GO:0055085(InterPro)
Cco05g2054 460 Gene3D Mitochondrial carrier domain 137 458 IPR023395 -
Cco05g2054 460 ProSiteProfiles Solute carrier (Solcar) repeat profile. 360 450 IPR018108 -
Cco05g2054 460 SUPERFAMILY Mitochondrial carrier 133 447 IPR023395 -
Cco05g2054 460 Pfam Mitochondrial carrier protein 360 453 IPR018108 -
Cco05g2054 460 Pfam Mitochondrial carrier protein 149 218 IPR018108 -
Cco05g2054 460 Pfam Mitochondrial carrier protein 236 332 IPR018108 -
Cco05g2054 460 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 116 456 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2054 Cco-Chr5:29585425 Cco11g0501 Cco-Chr11:5245461 2.00E-68 dispersed
Cco05g2054 Cco-Chr5:29585425 Cco09g0080 Cco-Chr9:732778 1.10E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2054 K15121 - csv:101213436 651.744