Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2059 | ATGAGGAAAAAGTCGCTTGATTCTGTTGTCTGCCATTTGTCTTTCTTCTTTATACTTCTTTTCTATGCCAGTTTCTGCTTTGCCAATCGCGATATGGAAGCGCTGTTGAAGATGAAGAGCGCCTTGATCGGACCGCGGAGGTCGGGGCTTGGTGATTGGGTGCCGTCGTCGTCCCCGTCTGCTCATTGCCATTTCTCTGGCGTTACGTGCGATGGCGATAGTAGAGTTGTTGCGCTTAACGTCTCAAATCTCCGTCTATTTGGTCCAATTCCGCCGGAAATTGGGATGTTGGAGAAGATTGAGAACTTGACCTTAGTGAGTAATAATCTCACCGGAGGGCTTCCTCTTGAAATGGCGAAACTCACGTCGCTTAAATTTCTTAACCTATCTAACAACGCATTTGGTGTTAATTTAGCGGCGGAAATCACGTTAGGAATGACGGAACTCGAGGTTTTCGATATATATAACAATAATTTCTCTTGTCCACTCCCGGTGGAGTTTGTCAAACTGAAGAAGCTTAAGCATCTTGACCTTGGCGGATCCTACTTTAATGGTAAGATTCCTGCTGTTTACTCGGAGATGCAGTCGTTGGAGTTCTTGAGCGTGCGGGGAAATACGCTTTCCGGAAGGATTCCGGCGAGTTTGGCGCGGTTAAAGAATCTTAAATATCTTTACGCCGGATATTTTAATCATTACGATGGCGGAATTCCGGCCGAGTTTGGATCGTTGAGTTCCCTGGAGCTTATCGATTTAGCCAGCTGTAACCTCACCGGTGAAATTCCTCCGAGTTTGGGGAATTTGAAGCACCTGCATAGTTTATTTCTTCAAGTAAACAATCTTACCGGTCGGATTCCCCCTGAACTTTCCGGTCTGATTAGCCTCAAGTCATTGGACCTCTCGCTGAACGAACTTACCGGAGAGATACCGTCGAGTTTCGTGGCGCTGCAGAACCTTACGCTGATCAATTTGTTCAGCAACAAACTTCACGGTCCAATTCCTAGTTTCGTCGGTGATTTTCCACATCTCGAAGTGCTTCAGTTGTGGAGTAACAACTTCACGCTCGAACTCCCTGAGAATCTCGGGCGTAACGGAAAATTGTTTCTGCTCGACGTGGCGACAAATCATTTAACTGGGCTTATTCCTCCGGATTTATGTAACGGTAGGTTGAAGATTTTGATTCTGTTAGATAATTACTTTTTTGGGCCCATCCCTGAGAAATTAGGCCGGTGTGATTCGCTTACGAAAATAAGAATTGCGGGTAATTTCTTCAATGGAACGGTTCCGGCAGGGTTCTTCAACTTTCCGGCGTTGGAGCTACTCGATATCAGTAATAATTACTTTTCCGGCGCTCTTCCATCGCAAATGTCAGGGGAGTTTCTTGGAACTCTGCAGCTGAATAACAACAATATAACCGGGGAAATCCCGGCGGCGATTAAGAATTTAAAAAACTTGCAGGTTGTTTCTCTGGAACATAACCAATTCAACGGGAAATTGCCTGTGGAAATATTTGAATTGAGCAAGTTGCTGAGGATTAACATCAGCTTTAACAATATTAGCGGCGAGATCCCGCATTCGGTCGTTCATTGCACCTCTCTAACGTCAATTGATCTCAGTAAAAATGATCTTGTCGGCACAATTCCAAGAGGAATTTCGAAGCTGAAAATCTTGAGCGTCTTCAATTTGTCAAGAAATCACTTGACGGGCCAAATTCCGAATGAGATTCGGTCGATGATGAGCCTAACAACTCTGGATTTGTCATACAACAATTTTTTCGGTAGAATCCCCACCGGCGGTCAGTTTTCGGTATTCAACGGCAGCGCTTTCGTCGGAAACCCTAACCTCTGTTTCCCCCATGGGCCTTGCGCATCAATGCACAGGAATTTGAGATCTGTTAAACTAATCATCCCAATCGTTGCGATATTCATCGCTCTATTATGCGCACTCGCTGCATTTTATCTACGGAAGAGAAAGAGGATTCAAAAGTCAAAGGCATGGAAACTCACAGCGTTCCAACGCCTGAACTTCAAAGCAGAGGACGTCCTTGAGTGTTTGAAGGAGGATAATATCATCGGCAAAGGCGGTGCCGGGGTCGTCTACCGTGGATCAATGCCAGACGGCTCCGTCGTGGCGATTAAACTATTGTTAGGAAGCGGCCGGAATGACCACGGTTTCTCGGCCGAAATTCAGACTCTAGGGCGAATCAAGCACCGGAATATCGTCAGGCTTTTGGGGTACGTGTCGAACAGGGATACGAATCTGCTGCTGTACGAATACATGCCTAATGGTAGCTTGGACCAGAGGCTGCATGGAGTGAAGGGCGGGCATTTGCACTGGGACTTACGGTACAAGATCGCAATAGAAGCCGCCAAGGGGCTCTGTTACTTGCACCATGATTGTACGCCGCTGATCATTCACAGAGACGTGAAGTCCAATAATATCCTACTCGATAAGCTGTTTGAGGCACATGTTTCTGACTTTGGGCTCGCCAAGTTCTTGCAGAACGGCGGCGCCTCCGAGTGTATGTCCTCCATTGCCGGCTCCTACGGTTACATCGCTCCAGAATACGCCTACACTCTTAAAGTGGACGAGAAAAGCGACGTGTACAGTTTCGGTGTGGTACTGCTGGAGCTTATAGCCGGGAGGAAGCCAGTGGGGGATTTTGGAGAAGGCGTGGACATAGTCAGGTGGGTCCTCAAAACCACATCAGAACTCTCTCAACCGTCGGATGCAGCCTCAGTATTAGCTGTGGTGGACTCGCGCCTCACAGAATACCCTCTCCAAGGTGTAATCCATCTCTTCAAAATAGCCATGATGTGCGTTGAAGAAGACAGCTCTGCAAGGCCAACCATGAGAGAGGTTGTCCACATGCTCTCCAATCCTCCCAGAATGGGAAGAGAGTTGAGAATATGTGTTTGTTTGACTTATGAATGCTTAAAGGAAGGAATAAAATCACTCTGTTTCAGTCAAATTCTAGAGACAAAAGATCCTCATTCATCAACCAGGGGAGAGAGAAATTCGGAGGAGGAGGAGGAGTTTTTGGAGCTCCTATTTCTCGAGGGTTTCGACGTCTGTTGTCAAGCGTTCTTTCATAATTTTGACCTGGTGGCTGCTAAATGGATGAAAAGGTTCTCTCATCTCATGCTGTCAAGGATGGTATATGAAGCATGA | 3168 | 46.65 | MRKKSLDSVVCHLSFFFILLFYASFCFANRDMEALLKMKSALIGPRRSGLGDWVPSSSPSAHCHFSGVTCDGDSRVVALNVSNLRLFGPIPPEIGMLEKIENLTLVSNNLTGGLPLEMAKLTSLKFLNLSNNAFGVNLAAEITLGMTELEVFDIYNNNFSCPLPVEFVKLKKLKHLDLGGSYFNGKIPAVYSEMQSLEFLSVRGNTLSGRIPASLARLKNLKYLYAGYFNHYDGGIPAEFGSLSSLELIDLASCNLTGEIPPSLGNLKHLHSLFLQVNNLTGRIPPELSGLISLKSLDLSLNELTGEIPSSFVALQNLTLINLFSNKLHGPIPSFVGDFPHLEVLQLWSNNFTLELPENLGRNGKLFLLDVATNHLTGLIPPDLCNGRLKILILLDNYFFGPIPEKLGRCDSLTKIRIAGNFFNGTVPAGFFNFPALELLDISNNYFSGALPSQMSGEFLGTLQLNNNNITGEIPAAIKNLKNLQVVSLEHNQFNGKLPVEIFELSKLLRINISFNNISGEIPHSVVHCTSLTSIDLSKNDLVGTIPRGISKLKILSVFNLSRNHLTGQIPNEIRSMMSLTTLDLSYNNFFGRIPTGGQFSVFNGSAFVGNPNLCFPHGPCASMHRNLRSVKLIIPIVAIFIALLCALAAFYLRKRKRIQKSKAWKLTAFQRLNFKAEDVLECLKEDNIIGKGGAGVVYRGSMPDGSVVAIKLLLGSGRNDHGFSAEIQTLGRIKHRNIVRLLGYVSNRDTNLLLYEYMPNGSLDQRLHGVKGGHLHWDLRYKIAIEAAKGLCYLHHDCTPLIIHRDVKSNNILLDKLFEAHVSDFGLAKFLQNGGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGDFGEGVDIVRWVLKTTSELSQPSDAASVLAVVDSRLTEYPLQGVIHLFKIAMMCVEEDSSARPTMREVVHMLSNPPRMGRELRICVCLTYECLKEGIKSLCFSQILETKDPHSSTRGERNSEEEEEFLELLFLEGFDVCCQAFFHNFDLVAAKWMKRFSHLMLSRMVYEA | 1055 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 29632991 | 29644074 | + | CcPI632755_05g020590.1 | Cco05g2059 | 179687 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2059 | 1055 | Gene3D | Ribonuclease Inhibitor | 30 | 141 | IPR032675 | - | |
Cco05g2059 | 1055 | Gene3D | Ribonuclease Inhibitor | 334 | 627 | IPR032675 | - | |
Cco05g2059 | 1055 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 803 | 815 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco05g2059 | 1055 | Gene3D | Ribonuclease Inhibitor | 231 | 330 | IPR032675 | - | |
Cco05g2059 | 1055 | Gene3D | Ribonuclease Inhibitor | 142 | 230 | IPR032675 | - | |
Cco05g2059 | 1055 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 | 231 | 335 | - | - | |
Cco05g2059 | 1055 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 15 | 958 | IPR050647 | - | |
Cco05g2059 | 1055 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase | 759 | 968 | - | - | |
Cco05g2059 | 1055 | SMART | LRR_typ_2 | 291 | 315 | IPR003591 | - | |
Cco05g2059 | 1055 | SMART | LRR_typ_2 | 243 | 267 | IPR003591 | - | |
Cco05g2059 | 1055 | SMART | LRR_typ_2 | 121 | 145 | IPR003591 | - | |
Cco05g2059 | 1055 | SMART | LRR_typ_2 | 481 | 505 | IPR003591 | - | |
Cco05g2059 | 1055 | SMART | LRR_typ_2 | 553 | 577 | IPR003591 | - | |
Cco05g2059 | 1055 | SMART | LRR_typ_2 | 339 | 363 | IPR003591 | - | |
Cco05g2059 | 1055 | Pfam | Leucine Rich Repeat | 196 | 218 | IPR001611 | GO:0005515(InterPro) | |
Cco05g2059 | 1055 | Pfam | Leucine Rich Repeat | 293 | 313 | IPR001611 | GO:0005515(InterPro) | |
Cco05g2059 | 1055 | Pfam | Leucine Rich Repeat | 437 | 455 | IPR001611 | GO:0005515(InterPro) | |
Cco05g2059 | 1055 | Pfam | Leucine Rich Repeat | 245 | 267 | IPR001611 | GO:0005515(InterPro) | |
Cco05g2059 | 1055 | Pfam | Leucine Rich Repeat | 462 | 481 | IPR001611 | GO:0005515(InterPro) | |
Cco05g2059 | 1055 | Gene3D | Phosphorylase Kinase; domain 1 | 649 | 758 | - | - | |
Cco05g2059 | 1055 | SUPERFAMILY | Protein kinase-like (PK-like) | 675 | 957 | IPR011009 | - | |
Cco05g2059 | 1055 | ProSiteProfiles | Protein kinase domain profile. | 684 | 963 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g2059 | 1055 | Gene3D | Transferase(Phosphotransferase) domain 1 | 759 | 965 | - | - | |
Cco05g2059 | 1055 | FunFam | LRR receptor-like serine/threonine-protein kinase EFR | 336 | 627 | - | - | |
Cco05g2059 | 1055 | Pfam | Leucine rich repeat | 531 | 590 | IPR001611 | GO:0005515(InterPro) | |
Cco05g2059 | 1055 | SMART | serkin_6 | 684 | 957 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g2059 | 1055 | Pfam | Leucine rich repeat N-terminal domain | 29 | 71 | IPR013210 | - | |
Cco05g2059 | 1055 | SUPERFAMILY | L domain-like | 380 | 623 | - | - | |
Cco05g2059 | 1055 | SUPERFAMILY | L domain-like | 70 | 398 | - | - | |
Cco05g2059 | 1055 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 | 142 | 230 | - | - | |
Cco05g2059 | 1055 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 | 653 | 758 | - | - | |
Cco05g2059 | 1055 | Pfam | Protein kinase domain | 686 | 955 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2059 | Cco-Chr5:29632991 | Cco10g0762 | Cco-Chr10:12065143 | 8.30E-09 | dispersed | |
Cco05g2059 | Cco-Chr5:29632991 | Cco04g1559 | Cco-Chr4:30948394 | 4.70E-97 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86868 | PF00069 | Pkinase | 3.20E-42 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2059 | - | - | - | 0.0 |