Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2059 ATGAGGAAAAAGTCGCTTGATTCTGTTGTCTGCCATTTGTCTTTCTTCTTTATACTTCTTTTCTATGCCAGTTTCTGCTTTGCCAATCGCGATATGGAAGCGCTGTTGAAGATGAAGAGCGCCTTGATCGGACCGCGGAGGTCGGGGCTTGGTGATTGGGTGCCGTCGTCGTCCCCGTCTGCTCATTGCCATTTCTCTGGCGTTACGTGCGATGGCGATAGTAGAGTTGTTGCGCTTAACGTCTCAAATCTCCGTCTATTTGGTCCAATTCCGCCGGAAATTGGGATGTTGGAGAAGATTGAGAACTTGACCTTAGTGAGTAATAATCTCACCGGAGGGCTTCCTCTTGAAATGGCGAAACTCACGTCGCTTAAATTTCTTAACCTATCTAACAACGCATTTGGTGTTAATTTAGCGGCGGAAATCACGTTAGGAATGACGGAACTCGAGGTTTTCGATATATATAACAATAATTTCTCTTGTCCACTCCCGGTGGAGTTTGTCAAACTGAAGAAGCTTAAGCATCTTGACCTTGGCGGATCCTACTTTAATGGTAAGATTCCTGCTGTTTACTCGGAGATGCAGTCGTTGGAGTTCTTGAGCGTGCGGGGAAATACGCTTTCCGGAAGGATTCCGGCGAGTTTGGCGCGGTTAAAGAATCTTAAATATCTTTACGCCGGATATTTTAATCATTACGATGGCGGAATTCCGGCCGAGTTTGGATCGTTGAGTTCCCTGGAGCTTATCGATTTAGCCAGCTGTAACCTCACCGGTGAAATTCCTCCGAGTTTGGGGAATTTGAAGCACCTGCATAGTTTATTTCTTCAAGTAAACAATCTTACCGGTCGGATTCCCCCTGAACTTTCCGGTCTGATTAGCCTCAAGTCATTGGACCTCTCGCTGAACGAACTTACCGGAGAGATACCGTCGAGTTTCGTGGCGCTGCAGAACCTTACGCTGATCAATTTGTTCAGCAACAAACTTCACGGTCCAATTCCTAGTTTCGTCGGTGATTTTCCACATCTCGAAGTGCTTCAGTTGTGGAGTAACAACTTCACGCTCGAACTCCCTGAGAATCTCGGGCGTAACGGAAAATTGTTTCTGCTCGACGTGGCGACAAATCATTTAACTGGGCTTATTCCTCCGGATTTATGTAACGGTAGGTTGAAGATTTTGATTCTGTTAGATAATTACTTTTTTGGGCCCATCCCTGAGAAATTAGGCCGGTGTGATTCGCTTACGAAAATAAGAATTGCGGGTAATTTCTTCAATGGAACGGTTCCGGCAGGGTTCTTCAACTTTCCGGCGTTGGAGCTACTCGATATCAGTAATAATTACTTTTCCGGCGCTCTTCCATCGCAAATGTCAGGGGAGTTTCTTGGAACTCTGCAGCTGAATAACAACAATATAACCGGGGAAATCCCGGCGGCGATTAAGAATTTAAAAAACTTGCAGGTTGTTTCTCTGGAACATAACCAATTCAACGGGAAATTGCCTGTGGAAATATTTGAATTGAGCAAGTTGCTGAGGATTAACATCAGCTTTAACAATATTAGCGGCGAGATCCCGCATTCGGTCGTTCATTGCACCTCTCTAACGTCAATTGATCTCAGTAAAAATGATCTTGTCGGCACAATTCCAAGAGGAATTTCGAAGCTGAAAATCTTGAGCGTCTTCAATTTGTCAAGAAATCACTTGACGGGCCAAATTCCGAATGAGATTCGGTCGATGATGAGCCTAACAACTCTGGATTTGTCATACAACAATTTTTTCGGTAGAATCCCCACCGGCGGTCAGTTTTCGGTATTCAACGGCAGCGCTTTCGTCGGAAACCCTAACCTCTGTTTCCCCCATGGGCCTTGCGCATCAATGCACAGGAATTTGAGATCTGTTAAACTAATCATCCCAATCGTTGCGATATTCATCGCTCTATTATGCGCACTCGCTGCATTTTATCTACGGAAGAGAAAGAGGATTCAAAAGTCAAAGGCATGGAAACTCACAGCGTTCCAACGCCTGAACTTCAAAGCAGAGGACGTCCTTGAGTGTTTGAAGGAGGATAATATCATCGGCAAAGGCGGTGCCGGGGTCGTCTACCGTGGATCAATGCCAGACGGCTCCGTCGTGGCGATTAAACTATTGTTAGGAAGCGGCCGGAATGACCACGGTTTCTCGGCCGAAATTCAGACTCTAGGGCGAATCAAGCACCGGAATATCGTCAGGCTTTTGGGGTACGTGTCGAACAGGGATACGAATCTGCTGCTGTACGAATACATGCCTAATGGTAGCTTGGACCAGAGGCTGCATGGAGTGAAGGGCGGGCATTTGCACTGGGACTTACGGTACAAGATCGCAATAGAAGCCGCCAAGGGGCTCTGTTACTTGCACCATGATTGTACGCCGCTGATCATTCACAGAGACGTGAAGTCCAATAATATCCTACTCGATAAGCTGTTTGAGGCACATGTTTCTGACTTTGGGCTCGCCAAGTTCTTGCAGAACGGCGGCGCCTCCGAGTGTATGTCCTCCATTGCCGGCTCCTACGGTTACATCGCTCCAGAATACGCCTACACTCTTAAAGTGGACGAGAAAAGCGACGTGTACAGTTTCGGTGTGGTACTGCTGGAGCTTATAGCCGGGAGGAAGCCAGTGGGGGATTTTGGAGAAGGCGTGGACATAGTCAGGTGGGTCCTCAAAACCACATCAGAACTCTCTCAACCGTCGGATGCAGCCTCAGTATTAGCTGTGGTGGACTCGCGCCTCACAGAATACCCTCTCCAAGGTGTAATCCATCTCTTCAAAATAGCCATGATGTGCGTTGAAGAAGACAGCTCTGCAAGGCCAACCATGAGAGAGGTTGTCCACATGCTCTCCAATCCTCCCAGAATGGGAAGAGAGTTGAGAATATGTGTTTGTTTGACTTATGAATGCTTAAAGGAAGGAATAAAATCACTCTGTTTCAGTCAAATTCTAGAGACAAAAGATCCTCATTCATCAACCAGGGGAGAGAGAAATTCGGAGGAGGAGGAGGAGTTTTTGGAGCTCCTATTTCTCGAGGGTTTCGACGTCTGTTGTCAAGCGTTCTTTCATAATTTTGACCTGGTGGCTGCTAAATGGATGAAAAGGTTCTCTCATCTCATGCTGTCAAGGATGGTATATGAAGCATGA 3168 46.65 MRKKSLDSVVCHLSFFFILLFYASFCFANRDMEALLKMKSALIGPRRSGLGDWVPSSSPSAHCHFSGVTCDGDSRVVALNVSNLRLFGPIPPEIGMLEKIENLTLVSNNLTGGLPLEMAKLTSLKFLNLSNNAFGVNLAAEITLGMTELEVFDIYNNNFSCPLPVEFVKLKKLKHLDLGGSYFNGKIPAVYSEMQSLEFLSVRGNTLSGRIPASLARLKNLKYLYAGYFNHYDGGIPAEFGSLSSLELIDLASCNLTGEIPPSLGNLKHLHSLFLQVNNLTGRIPPELSGLISLKSLDLSLNELTGEIPSSFVALQNLTLINLFSNKLHGPIPSFVGDFPHLEVLQLWSNNFTLELPENLGRNGKLFLLDVATNHLTGLIPPDLCNGRLKILILLDNYFFGPIPEKLGRCDSLTKIRIAGNFFNGTVPAGFFNFPALELLDISNNYFSGALPSQMSGEFLGTLQLNNNNITGEIPAAIKNLKNLQVVSLEHNQFNGKLPVEIFELSKLLRINISFNNISGEIPHSVVHCTSLTSIDLSKNDLVGTIPRGISKLKILSVFNLSRNHLTGQIPNEIRSMMSLTTLDLSYNNFFGRIPTGGQFSVFNGSAFVGNPNLCFPHGPCASMHRNLRSVKLIIPIVAIFIALLCALAAFYLRKRKRIQKSKAWKLTAFQRLNFKAEDVLECLKEDNIIGKGGAGVVYRGSMPDGSVVAIKLLLGSGRNDHGFSAEIQTLGRIKHRNIVRLLGYVSNRDTNLLLYEYMPNGSLDQRLHGVKGGHLHWDLRYKIAIEAAKGLCYLHHDCTPLIIHRDVKSNNILLDKLFEAHVSDFGLAKFLQNGGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGDFGEGVDIVRWVLKTTSELSQPSDAASVLAVVDSRLTEYPLQGVIHLFKIAMMCVEEDSSARPTMREVVHMLSNPPRMGRELRICVCLTYECLKEGIKSLCFSQILETKDPHSSTRGERNSEEEEEFLELLFLEGFDVCCQAFFHNFDLVAAKWMKRFSHLMLSRMVYEA 1055
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29632991 29644074 + CcPI632755_05g020590.1 Cco05g2059 179687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2059 1055 Gene3D Ribonuclease Inhibitor 30 141 IPR032675 -
Cco05g2059 1055 Gene3D Ribonuclease Inhibitor 334 627 IPR032675 -
Cco05g2059 1055 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2059 1055 Gene3D Ribonuclease Inhibitor 231 330 IPR032675 -
Cco05g2059 1055 Gene3D Ribonuclease Inhibitor 142 230 IPR032675 -
Cco05g2059 1055 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 231 335 - -
Cco05g2059 1055 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 958 IPR050647 -
Cco05g2059 1055 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 759 968 - -
Cco05g2059 1055 SMART LRR_typ_2 291 315 IPR003591 -
Cco05g2059 1055 SMART LRR_typ_2 243 267 IPR003591 -
Cco05g2059 1055 SMART LRR_typ_2 121 145 IPR003591 -
Cco05g2059 1055 SMART LRR_typ_2 481 505 IPR003591 -
Cco05g2059 1055 SMART LRR_typ_2 553 577 IPR003591 -
Cco05g2059 1055 SMART LRR_typ_2 339 363 IPR003591 -
Cco05g2059 1055 Pfam Leucine Rich Repeat 196 218 IPR001611 GO:0005515(InterPro)
Cco05g2059 1055 Pfam Leucine Rich Repeat 293 313 IPR001611 GO:0005515(InterPro)
Cco05g2059 1055 Pfam Leucine Rich Repeat 437 455 IPR001611 GO:0005515(InterPro)
Cco05g2059 1055 Pfam Leucine Rich Repeat 245 267 IPR001611 GO:0005515(InterPro)
Cco05g2059 1055 Pfam Leucine Rich Repeat 462 481 IPR001611 GO:0005515(InterPro)
Cco05g2059 1055 Gene3D Phosphorylase Kinase; domain 1 649 758 - -
Cco05g2059 1055 SUPERFAMILY Protein kinase-like (PK-like) 675 957 IPR011009 -
Cco05g2059 1055 ProSiteProfiles Protein kinase domain profile. 684 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2059 1055 Gene3D Transferase(Phosphotransferase) domain 1 759 965 - -
Cco05g2059 1055 FunFam LRR receptor-like serine/threonine-protein kinase EFR 336 627 - -
Cco05g2059 1055 Pfam Leucine rich repeat 531 590 IPR001611 GO:0005515(InterPro)
Cco05g2059 1055 SMART serkin_6 684 957 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2059 1055 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Cco05g2059 1055 SUPERFAMILY L domain-like 380 623 - -
Cco05g2059 1055 SUPERFAMILY L domain-like 70 398 - -
Cco05g2059 1055 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 142 230 - -
Cco05g2059 1055 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 653 758 - -
Cco05g2059 1055 Pfam Protein kinase domain 686 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2059 Cco-Chr5:29632991 Cco10g0762 Cco-Chr10:12065143 8.30E-09 dispersed
Cco05g2059 Cco-Chr5:29632991 Cco04g1559 Cco-Chr4:30948394 4.70E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86868 PF00069 Pkinase 3.20E-42 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2059 - - - 0.0