Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2061 ATGTCGCAAGAGTCGCACGTGTCCCACGGGTGCCGTCGTCTCATCGCTTACGAAGACCGAAATTGTTTCACAGACGACAAAACGAGGGTTTTGTGTAAACGGAAAAGAGAAAGAAAGAAGGCCCAAATTCTAGAGAGAGAAAATCCTCATTCATCAACCAGAGGAGAGAGAAATTCGGAGGAGGAGGAATTTTTGGAGCTCCTATTTCTCGTCCACTCCCAAGCTAGGGTTTCGACTTCTGTTGTCAAGTGTTCTTTCATAATTTTGACCTGGTGGTCTGTTAGATGGATGAAAAGAGTTGAAGAGTTGATCAATGTTATGCAAAAGGAGAAGGATTGTTTTGTGAAGAATGTTAGTGATGCAACTAGGCACTGGGCTGCTGTTGCAGGTGCTATTGCTGCTACGGAGAATAAAGATTGTCTTGATCTTTTTATCCAATTAGATGGACTAAGCTTCATTCAAAGATGGCTTAAGGATGCTCAAAAGTTCAGTAATGATACAAATGATAGCACCGTGGAAGAGTCTATCATTGTTTTGTTACAAGCACTTAAAAAGCTACATATAACTGCTGAGAAATCTATTTCTTCTGGGATTTTGTTTACTGTTAAGAGTCTTTATGAAAATACTGACCATGGCAAATCTAGGTTTGGGAAAGAATTGAGTGTACTTCTTGATAGGTGGATGCAGGAGATAAATGATAAAGATTTGCTGCATGATGCAGAAAAGGTTGGTGTTCATTTTGATGAAGAAAATTCAAATCTTGCTCGTGTAGCAGGAAGGTCATCTGCTTCAGGTGCATCTGTTTCGATAGAATCAAGTGATGGAAAACAAACAGCAGAACCTGTCAGGGACAAGGTATTATCCTGTGGAAGCTCAGATGCACTTCACCCAGATGAGATCGAACATTCAAAGGTTCAATCTCCAAGAAATGAGCTCAACTCTCATTCAAATTCTGGAAATTCAGTTGTGAAAGATAGATCTCCAGATTTAACAACAAACTCTGCTATTATGTTGGTCCCAACCGAGGATGTTTTGAAGAAGGAAGAAACATCTCTTTGTTCTGTTGGAGGTGGAACCTCAGTTAGTGTGGCTTGTAGCTTTCCAGCTGCTGCAAGAGAAGGTAGCGATAATGAACAATTAGCTGGTGGTTCAAAGAAGTTGAATGAGTCACCAGAGCTTGAAAACCAAGTGAGTAAGATTGATGGCTCTTGTGGTAGGTCATGTGTGACAGAGAAATCAGATAACTCTTTGCATTCTCCCATGCAAGATCCTGGAACTGTTTTGGAAGGTTTCGATGCTGCAAATGGTGAAGAGTCTGCTAAAGAAGCTCCAGCTGAACAGGATAATGATGGTCTTGAAAATGCTGGTGTCCGTCAGCGTAGTTCTAGTCTAGATAGTGAGAGAGTTTCCACATTAGATTCAGCAAGTGGGATATCTGATAAAAAGACGAATTATGCTAGCATGTCTGTGTTCAAACCTGCAGGCTTAGATGCTGAGCGCTATGGAAATACTCTGCGGGATTTGTCTATGAATGGGAGTCGAATAGGAAAACTTGAGGAACGTGGGTCTTCTTTTTCGAGGATGGAAGACTTTGGTCGAGTTAATGGAGACAGACAACGTCGGAGAAAGGAAGATGACGGTGGAATGACTAAGTCTGAATTTTCCAAACCGAAATTAAACCTCAAAACTTCAAATGGGTCAGACATGGAACTTGAGTATGGTATAGTTGATGCTCTGGAGGTTGCTCGGCAAGTAGCTCAAGAAGTAGAAAGAGAAGTGGTGGAATATAGAGAGCCATCCTGCAGCTCTTCTTCTGATAAAGTTTCTGATGGTGGAATCAGGCAGCTGGGTAAACCAGACATCATGGCTGAAAAACAGGACCTGCCAGCTGATCTCCAAGGAAGGGAGGTCCAATCTGCAAAAAGTCATGTTGCTGAATCATATTCTGATGCGGAGACATGCTTAACCAATCCAGATAATTTAGATACTCAACCAGAAAATTTAAATGAAATGGAATCCTCCATGGTCACTGAAGCAGCTCGAGGGGCAGATGCAAGTACAGAAAAAGGGTTTTGTGAATTTGATCTAAATCAAGACGTATTTAATGATGATGCAGAGCAGTTAGCAACTCCAGTGTCTTTACCGGTGTCTATTATCTCTGTTTCTAGACCAGCTGCTTCTTCTGGATTGCCTCTAACACCTTTGCAGTTTGAAGGGGCGCTTGGATGGAGAGGCTCTGCAGCCACTAGTGCTTTCCGGCCTGCTTCCCCACGTAAAGTTCCTGATAGTGATAGAACTCTTTCTAGTGGGGGAAATTCTGATAGTTCAAAGCAGAGGCAGGATTTTCTTGACATTGATTTGAATGTGGCTGAGACTGGAGAAGAAACCAGGAAACAAAACCTAGGATCATCTTTCCCACAATCCGGAGAGTTTTTAGTTGAAAGTGGACAAAGAAGATCCGGGGGACTAAAGCTGGACCTTAACTGTGTCGGTGACGATGTTGATACTCCAGCATCAGATTTGAGAATGGAGGGACTCTTCAACAACCAGAATAGCTACAGTGCTTCTCCTGCCTGCTCTTCATCATCGATGCAACCTTTGGTAAGGAATATTGATTTGAATGATAGGCCATATGTTCAAGGTGATGCTCCAGATCAAGGTCCTGGTAAGTATTGTCAAAATGCAACTGCTTATGGACGGAGTAATTCAGATGCTTCTGTTATTTCCATTATGGGTACAAGGGTGGAAGTTAGTAGAAAGGATTTTCCTTTTCATGCTTCATCATTGCCAAATGGCAGAACTGTTGAGCCTGCTGGAATGGGTGCTACTTTGGCAAGGACAGGAGATATACTAGGGATGAGCTCTGCGGTTTCTTACCACCAAACTCCTTTTATTGGTTACAATGGATTGACACCAGGGCCGACCATTTCATTCTCAACCATGTATGAACCTAGCGGTTCAATGCCTTACATGGTTGATTCAAGAGGAGCTGCTGTTATGCCTCAATTTATGGGCCCTATGTCAGCTGTTCCGCCTTCCTCTTACTCTCACCCACCATTTATCATGGGGATGGCAGATGCACAGCTGACTCCCAATGGCATTGCTCACTCGCGTCCTAAGTTCGATTTGAATTCTGGATTAAGTGATTCTGGGGGTTTAAAGCAGCTCCTATTCCCAAGCCATCTCCGACCCATGGAAGAGCAGTTGAGACAACCCTCAAGTTCTGGAGTTGGTGCGAAAAGGAAAGAGCCAGATTGCCCTGATAGTGGATGGGAAGGGTATCTGCTAAGCTATAAACATCAACAGCCTCCATGGAAACAGTAA 3324 43.05 MSQESHVSHGCRRLIAYEDRNCFTDDKTRVLCKRKRERKKAQILERENPHSSTRGERNSEEEEFLELLFLVHSQARVSTSVVKCSFIILTWWSVRWMKRVEELINVMQKEKDCFVKNVSDATRHWAAVAGAIAATENKDCLDLFIQLDGLSFIQRWLKDAQKFSNDTNDSTVEESIIVLLQALKKLHITAEKSISSGILFTVKSLYENTDHGKSRFGKELSVLLDRWMQEINDKDLLHDAEKVGVHFDEENSNLARVAGRSSASGASVSIESSDGKQTAEPVRDKVLSCGSSDALHPDEIEHSKVQSPRNELNSHSNSGNSVVKDRSPDLTTNSAIMLVPTEDVLKKEETSLCSVGGGTSVSVACSFPAAAREGSDNEQLAGGSKKLNESPELENQVSKIDGSCGRSCVTEKSDNSLHSPMQDPGTVLEGFDAANGEESAKEAPAEQDNDGLENAGVRQRSSSLDSERVSTLDSASGISDKKTNYASMSVFKPAGLDAERYGNTLRDLSMNGSRIGKLEERGSSFSRMEDFGRVNGDRQRRRKEDDGGMTKSEFSKPKLNLKTSNGSDMELEYGIVDALEVARQVAQEVEREVVEYREPSCSSSSDKVSDGGIRQLGKPDIMAEKQDLPADLQGREVQSAKSHVAESYSDAETCLTNPDNLDTQPENLNEMESSMVTEAARGADASTEKGFCEFDLNQDVFNDDAEQLATPVSLPVSIISVSRPAASSGLPLTPLQFEGALGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAETGEETRKQNLGSSFPQSGEFLVESGQRRSGGLKLDLNCVGDDVDTPASDLRMEGLFNNQNSYSASPACSSSSMQPLVRNIDLNDRPYVQGDAPDQGPGKYCQNATAYGRSNSDASVISIMGTRVEVSRKDFPFHASSLPNGRTVEPAGMGATLARTGDILGMSSAVSYHQTPFIGYNGLTPGPTISFSTMYEPSGSMPYMVDSRGAAVMPQFMGPMSAVPPSSYSHPPFIMGMADAQLTPNGIAHSRPKFDLNSGLSDSGGLKQLLFPSHLRPMEEQLRQPSSSGVGAKRKEPDCPDSGWEGYLLSYKHQQPPWKQ 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29655630 29660730 + CcPI632755_05g020610.1 Cco05g2061 179689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2061 1107 MobiDBLite consensus disorder prediction 1063 1093 - -
Cco05g2061 1107 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 95 236 IPR035441 -
Cco05g2061 1107 ProSiteProfiles TFIIS N-terminal domain profile. 151 234 IPR017923 -
Cco05g2061 1107 MobiDBLite consensus disorder prediction 372 479 - -
Cco05g2061 1107 MobiDBLite consensus disorder prediction 529 552 - -
Cco05g2061 1107 MobiDBLite consensus disorder prediction 381 422 - -
Cco05g2061 1107 MobiDBLite consensus disorder prediction 529 554 - -
Cco05g2061 1107 MobiDBLite consensus disorder prediction 762 778 - -
Cco05g2061 1107 MobiDBLite consensus disorder prediction 454 479 - -
Cco05g2061 1107 MobiDBLite consensus disorder prediction 309 329 - -
Cco05g2061 1107 MobiDBLite consensus disorder prediction 748 781 - -
Cco05g2061 1107 MobiDBLite consensus disorder prediction 301 329 - -
Cco05g2061 1107 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 98 1106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2061 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2061 Cco-Chr5:29655630 Cco10g1437 Cco-Chr10:27465702 5.30E-14 transposed
Cco05g2061 Cco-Chr5:29655630 Cco06g1885 Cco-Chr6:29053798 5.30E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1137 . Blo12g00881 . . . . Bma04g00250 Bma01g02376 . . Cma01g01979 Cma09g00097 Car01g01551 . . Cpe06g00060 . . . . . . . . . . . . . . . . . Cone17ag1414 Cone20ag0069 Lsi04g01755 Csa03g04289 Chy04g00407 . . . . . . . . . Sed01g2483 Cmo01g02038 Cmo09g00094 . . . Car09g00085 . Cpe02g00065 Bhi09g02076 Tan01g5035 Cmetu04g3193 . Hepe01g1606 Mch11g0106 . Cla05g01862 Cam05g1991 Cec05g2003 Cco05g2061 Clacu05g1983 Cmu05g1864 Cre05g1988 . . . Cme04g00459
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008019 0 1 1 2 0 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 35