Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2062 ATGGGTTCAACACAATTTTCATTTCTATTATATCTTCTTACAATCCAAATTTCAGTATCAGGAGTATTTTCCACCACTTTCAGCATAGTAAATAAATGTGATTACACAGTTTGGCCGGGAATTCTCTCAAACGCCGGAGTTCCACCACTTCCCACCACAGGCTTCGTCCTTGCCGCCGGCGAGTCCAAAACAATCTCCGCTCCGGCGTCTTGGGGTGGCCGATTCTGGGGCCGAACTCGCTGTTCAGAAGACTCCACCGGAAAATTCTCTTGCCTCACTGGAGATTGCGGCTCCAACAAGGTCGAGTGCAGCGGAAACGGCGCGAAGCCACCGGCAACTCTGGCGGAGTTCACCCTTGACGGTGCCGGCGGGTTGGACTTCTTCGACGTGAGTTTGGTCGACGGTTACAATATCCCTATGCTGGTGGTCCCACAAGGTGGCACCGGCGAGAAATGCGTGAGCACGGGATGCGTTGTGGATTTGAACGGCGCGTGTCCTCAAGAACTCAAGGTTATGAGCGTTGACGGCGGAGATAACGTCGCGTGTAAAAGCGCGTGCGAAGCATTTAACCAACCGCAATTCTGTTGCAGTGGCGAGTACGCGACTCCCGATACTTGTCTACCTTCTGCGTACTCGCAGGTGTTCAAAAACGCGTGCCCACGCGCTTACAGCTACGCTTACGACGACACGACTAGCACGTTTACATGTGCCGACGCTGATTATATTATAACATTCTGCCCTTCACCCAACACTAGTCAGAAATCAACGGACAATCACAACACAAACACGCCGGCGATCAACGGCGGAAACGGTACAATGGTTTACGAAGGGGCTGAGTATGATCTAAGCGGCGCGTCGAGAACAACGCTCCGCCAATTTCTTGGGGTAGTCGTTGCCGCCGTGGCAATTCTTCAAATTCAGCAACTCGTTTGA 933 52.2 MGSTQFSFLLYLLTIQISVSGVFSTTFSIVNKCDYTVWPGILSNAGVPPLPTTGFVLAAGESKTISAPASWGGRFWGRTRCSEDSTGKFSCLTGDCGSNKVECSGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGTGEKCVSTGCVVDLNGACPQELKVMSVDGGDNVACKSACEAFNQPQFCCSGEYATPDTCLPSAYSQVFKNACPRAYSYAYDDTTSTFTCADADYIITFCPSPNTSQKSTDNHNTNTPAINGGNGTMVYEGAEYDLSGASRTTLRQFLGVVVAAVAILQIQQLV 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29662647 29664204 - CcPI632755_05g020620.1 Cco05g2062 179690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2062 310 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cco05g2062 310 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cco05g2062 310 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Cco05g2062 310 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Cco05g2062 310 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Cco05g2062 310 PANTHER OS03G0233200 PROTEIN 9 247 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cco05g2062 310 SUPERFAMILY Osmotin, thaumatin-like protein 25 248 IPR037176 -
Cco05g2062 310 CDD TLP-PA 26 246 - -
Cco05g2062 310 PIRSF PR5 1 278 IPR001938 -
Cco05g2062 310 Pfam Thaumatin family 31 247 IPR001938 -
Cco05g2062 310 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
Cco05g2062 310 SMART tha2 27 247 IPR001938 -
Cco05g2062 310 Gene3D Thaumatin 25 247 IPR037176 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2062 Cco-Chr5:29662647 Cco08g1606 Cco-Chr8:27606527 7.10E-126 dispersed
Cco05g2732 Cco-Chr5:35211865 Cco05g2062 Cco-Chr5:29662647 3.00E-76 transposed
Cco05g2062 Cco-Chr5:29662647 Cco08g1605 Cco-Chr8:27588244 6.10E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2062 - - - 0.0