Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2076 ATGGCACTCCTAACTAATTCCTCTACTGACCACAAGAAACCCCTCCGTAATAAACGCCGGAAAAAACACCCAACCCCAACACCGCCACCCTCCTCCGCCCAATCCTCATGGGACCATTTCAAGAATCTCATCACCTGCAAACAGGTTGAGGTTTCGAGATCAGTTCAGGAGCCGACGAAACGGTCACCGGCCTACTCCAAATTGGGCTCTTCTTGCAGTTCAATATGTAGCCTTAGAGATGTGGTTCATGGCAATGCTAAAGTGGTTCATAGAGCTGACAACTCACCGGAAAGCAGCTCCGTCGGACAAGAAACCAGGTTGCTTACTAGAAAATCTGCTAACGGCTCTTCCTCTCGTTCTTTAACCGCGCCGCCACCGCCATCCAGAACTAAAACCGCTGCTTCGGCTTCGGCTTCCTACAATTCCTCGTCTTCTAGAGGATTACAATTACGAAAGCTTTCTGGGTGTTACGAATGCCACACCATCGTTGACCCTAGCAGGTACCCAATTCCAAGGAGTTCTCTATGTCCTTGTCCTCAATGTGGAGAGGTCTTCCCTAAGGCTGAAAGCTTAGAGCTTCACCAATTAGTTCGCCACGCTGTTTCGGAATTGGGTCCTGACGATTCGGGTCGAAACATCGTGGAGATAATTTTCAAATCAAGCTGGCTGAAAAAGGACCGTCCAATTTGCAAGATCGAACGGATATTAAAGGTCCACAATACCCAACGCACCATCCAACGGTTTGAGGATTGCCGTGACGCAGTGAAGACACGTGCGCTCGGAAGCACCAGAAAAAATCCGCGATGTGCGGCTGACGGTAATGAGCTGTTGCGGTTCCATTGTAGCGCCTTGTGGTGTGACCTCGGCTCACGTGGCTCAACCGGCTTGTGCGGCTCGATTCCCGGCTGCGGTGTCTGCAGTGTAATTCGTCATGGATTCCAGTGTAAGCCCGGTGGGCCCCCTGGTGTACGGACCACCGCTAGTAGTGGTAGGGCCCACGATTCGTTTGAATGCGGCGACGGAAGGCGACGTGCGATGTTGGTCTGCCGTGTAATCGCCGGGAGAGTGAAGCGGATCTCGGAGGAGGCTGCGACGGAGGAGGAGAATCTGTCGACGGCGGCAGCCTCATACGACTCCGTTTCACGACACGCCGGGATGTACTCCAATCTCGAGGAGTTGATCATTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTTGTCATCTACGAAGCGCTCCAAACCTAA 1245 52.29 MALLTNSSTDHKKPLRNKRRKKHPTPTPPPSSAQSSWDHFKNLITCKQVEVSRSVQEPTKRSPAYSKLGSSCSSICSLRDVVHGNAKVVHRADNSPESSSVGQETRLLTRKSANGSSSRSLTAPPPPSRTKTAASASASYNSSSSRGLQLRKLSGCYECHTIVDPSRYPIPRSSLCPCPQCGEVFPKAESLELHQLVRHAVSELGPDDSGRNIVEIIFKSSWLKKDRPICKIERILKVHNTQRTIQRFEDCRDAVKTRALGSTRKNPRCAADGNELLRFHCSALWCDLGSRGSTGLCGSIPGCGVCSVIRHGFQCKPGGPPGVRTTASSGRAHDSFECGDGRRRAMLVCRVIAGRVKRISEEAATEEENLSTAAASYDSVSRHAGMYSNLEELIIFNPKAILPCFVVIYEALQT 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29744977 29747282 - CcPI632755_05g020760.1 Cco05g2076 179704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2076 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 204 IPR013087 -
Cco05g2076 414 SUPERFAMILY ADP-ribosylation 201 410 - -
Cco05g2076 414 MobiDBLite consensus disorder prediction 89 141 - -
Cco05g2076 414 MobiDBLite consensus disorder prediction 92 141 - -
Cco05g2076 414 Gene3D - 200 411 - -
Cco05g2076 414 MobiDBLite consensus disorder prediction 51 71 - -
Cco05g2076 414 MobiDBLite consensus disorder prediction 1 39 - -
Cco05g2076 414 ProSitePatterns Zinc finger C2H2 type domain signature. 176 199 IPR013087 -
Cco05g2076 414 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 35 409 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2103 Cco-Chr2:33898644 Cco05g2076 Cco-Chr5:29744977 4.30E-53 dispersed
Cco03g0954 Cco-Chr3:12548368 Cco05g2076 Cco-Chr5:29744977 7.50E-86 dispersed
Cco03g0958 Cco-Chr3:12617123 Cco05g2076 Cco-Chr5:29744977 4.00E-28 dispersed
Cco05g1697 Cco-Chr5:24934045 Cco05g2076 Cco-Chr5:29744977 1.70E-48 dispersed
Cco05g2076 Cco-Chr5:29744977 Cco10g0588 Cco-Chr10:7785120 1.70E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59341 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2076 - - - 0.0