Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2078 ATGGCAGGCAGTTGGATGAGTGGTGGGTCTGTAGCAGAGCAGAGGCAGCCAATAACGGATATCCAAATCTGGAATGCGTGGACTGAGACTGACTTTCTTTTTCTCTTTGATTCGGAGCTCTCAGAAGCAAAGGAATCGAGTCCAAGGAATTCAGAAATGACAGTAGCATCTTCGCTTTCTCGCCTCCACTCTCCATTTCTGTATTGTCCTCTCAAGCCGATTTCATCTACCTCTCTATCTGTAACATTCTCTAGAAATCAACGATCGCCAGCATCATATCCACGCATCAGAGCAGTAGATCTTGACCAAAACACGGTTGTGGCACTTTCAGTTGGGCTGGTGAGTGTTGCAGTTGGAATAGGCATTCCGGTATTCTATGAAACCCAAATAGATAATTCTGCAAAGCGTGAAAATACTCAGCCCTGCTTTCCCTGCAGTGGTTCGGGAGCACAGAAATGCAGATTTTGCATGGGAACTGGCAATGTGACCGTAGAACTTGGTGGAGATGAAAAAGAAGTCTCCCGGTGTATTAACTGTGATGGTGTTGGCACATTGACATGCACTACATGTCAGGGCTCTGGAATTCAACCTCGATATTTAGATCGCAGGGAAATGGGGATCAAACTCAATCTGATAATCACTAGCTACTCAGATCCACGAAAAATCCAAATGCTGCTACCACCAAAACATTTGCCGTTCATTAGGCCCCATCATCAAAATAATAAAGAGAAACAATGCAAGCTGAAAACCAAAAGAAGCGCACCTATTGAATTAGTTATACTGAATCTGTCTTCAGTAGGCATTCTTTCAGCTGTTCTCACTTTGGAAGCTTCTAATAACAAGGCTTATGCCATTATCAGCTGGTGGCTGGATCATGCATACTTCCCACCAGCAGCTGATTCTATGAATATTGTGCACAGCTGCTCATATATGGGACAGTCCTCGACTTTGATCATCTCAGATCGATGCTGGGCCTATGGAAAGACTTTCAGAAAATTAAGGCGCAATCTTGAAGACGTTATCATGCCAACTGCAAGAAGCCGATACCGTGTCAAGCCTTTTGACATCAAATACCATGATTTTAGCTTTACCCACAATGAAGGCAACACAGATTTATCAGAGGCAATCTATGCCGAAACTAGAATTCAGGGGACAATAATTTCCTTTTGCCGTGGTAAAACGTTATCTGGTTCCAAGAAGCCGAATGATTATAGAAACGAAGCGCAAGCAAGCGACGCCATGGAACTAAGGCTGACAAGGGTGAAAATGGTGTAG 1275 43.92 MAGSWMSGGSVAEQRQPITDIQIWNAWTETDFLFLFDSELSEAKESSPRNSEMTVASSLSRLHSPFLYCPLKPISSTSLSVTFSRNQRSPASYPRIRAVDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNSAKRENTQPCFPCSGSGAQKCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREMGIKLNLIITSYSDPRKIQMLLPPKHLPFIRPHHQNNKEKQCKLKTKRSAPIELVILNLSSVGILSAVLTLEASNNKAYAIISWWLDHAYFPPAADSMNIVHSCSYMGQSSTLIISDRCWAYGKTFRKLRRNLEDVIMPTARSRYRVKPFDIKYHDFSFTHNEGNTDLSEAIYAETRIQGTIISFCRGKTLSGSKKPNDYRNEAQASDAMELRLTRVKMV 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29764124 29769876 + CcPI632755_05g020780.1 Cco05g2078 179706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2078 424 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 136 196 IPR036410 -
Cco05g2078 424 Pfam Family of unknown function (DUF5351) 153 184 IPR035272 -
Cco05g2078 424 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN 46 195 - GO:0003756(PANTHER)|GO:0009507(PANTHER)|GO:0010206(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2078 K22520 - - csv:101216711 286.574
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1094 . Blo12g00887 Bda01g00488 Bda03g00287 . Bpe04g00244 Bma04g00244 . . . . Cma09g00111 . . . Cpe06g00074 . . . . . . . . . . . . . . . Cone4ag1965 Cone7ag1878 . . Lsi04g01736 Csa03g04271 Chy04g00424 . . . . . . . . . Sed13g1585 . Cmo09g00108 . . . Car09g00101 . . Bhi09g02096 Tan01g5009 Cmetu04g0223 . Hepe01g1622 Mch11g0126 . Cla05g01876 Cam05g2007 Cec05g2019 Cco05g2078 Clacu05g2000 Cmu05g1881 Cre05g2004 . . . Cme04g00476
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010445 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 31