Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2092 ATGGGCTCTGTGGAAGAGAAGCTCAAGACATCAGGGGGGTTGATTAATAACGGCCCACAGACTAACCTTCTCGACGAGATGAAGTTGTTGAAAGAAATGCAAGATCAAACAGGGGCCCGGAAGGCTATAAACTCCGAGTTATGGCACGCTTGTGCAGGTCCGCTTGTTTCCTTGCCCCATGTGGGTAGTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCAGTTTCGACCAAGAGAACAGCAACCTCACAGATTCCAAATTATCCTAATCTTCCCTCTCAGTTGATGTGCCAAGTTCAAAATGTTACCTTACATGCCGATAAAGATTCAGATGAAATCTACGCTCAAATGAGTCTTCAACCGGTGAACTCTGAAAAAGATGTCTTCTTAGTTCCGGACTTTGGACTAAGGCCGAGTAAACACCCAAATGAGTTTTTCTGCAAAACTTTAACTGCCAGTGACACCAGCACACATGGTGGGTTCTCAGTGCCACGCAGGGCTGCTGAAAAACTCTTTCCTCCATTGGATTACACAATGCAACCGCCAACACAGGAGCTCGTTGTTAGAGACTTGCATGACAATACCTGGACTTTTCGCCACATATACCGCGGGCAGCCGAAGCGACACCTTCTCACAACTGGGTGGAGTCTATTCGTTGGGGCAAAGAGGCTTAGAGCAGGCGATTCTGTCCTTTTTATAAGGGATGAAAAGTCCCAGTTGCTTATTGGAGTGAGGCGTGCTAACCGGCAACAAACAACATTGCCATCATCAGTTCTATCTGCCGATAGTATGCATATTGGGGTTCTTGCAGCTGCAGCTCATGCTGCTGCTAATCGAAGTCCATTTACAATCTTCTACAACCCCAGGGCATGTCCTTCAGAATTTGTTATTCCTTTAGCCAAGTATCGCAAATGTGTATACGGAACTCAGCTTTCTGCAGGCATGAGGTTCGGGATGATGTTTGAAACAGAAGAGTCCGGTAAACGCCGATATATGGGAACAATTGTTGGAATTAGCGATTTAGATCCACTTAGGTGGCCAGGTTCCAAGTGGAGAAATCTTCAGGTTGAGTGGGATGAGCCAGGATGCTGCGATAAGCAGAACAGGGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTATTCATTTTTCCTTCTCTGACTTCAGGTCTTAAACGTCCATTACACGGTGGATTTTTGGGAGAAACTGACTGGGGAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCTGAAAATATACGTGGGGATCTTTCATATGCGCCAACTTTATGCTCTGAACCACTGATGAAGATGTTACTGAGGCCTCAAATGGTTAACCTTCAGGGAACCACCTTACAGCAGGATTCAGTTAACAATTTAGTTAAGATACAGAACGTGGACATGCAGCCAGTGACCAAAATGCAGCAGCTTATAGCTGCATCTCCCGGGAATCAAAATCATCATCATCATCCAGCACCTACACAATCTGATGTCATAAACCCAAATTCATCACCAAAAGAAAATCTACCCGGAAATGTACACACTTCGGCGGCCATTGAAAGTGAAGCTCCAACTGCAGCTGATTTAGACAAGGCGAAATATGAACGTGATCATTCAACCAATCAGTCCAATCCATTGCCCTCAGTTGGAGATTGTGGGGAGGAAAAACTCACTGGTAACGAAGTGAATATGCAAACGCTTGTAAACCAGCTTTCATTTGTGAACCAGAATCAGATTCCCATGCAGTTGCAATCCGTATCATGGCCCATGCAGCCGCAGCTTGAGTCACTAATCCAACACCCACAACCAACTGACATGCCTCAGCCTGAATTTACGAGTTCAAATGGTTTGATTTCATCCTTGGACGGCGATGGATGTTTGATTAACCCATCCTGTCTGCCTCTTCCTGGAGTAATGAGATCACCAGGGAATCTTTCCATGTTGGGACTGCAAGACTCTTCAATAGTCTTTCCTGAGGCTCCTAATTTTCCCTTACCCTCAACAGGCCAAGACATGTGGGATCCTCTTAACAATATAAGGTTCTCATCCCAAACCAATCATCTCGTCTCATTCTCTCATCCAGACGTATCTAACATCAACTGTATGGCTAATGCAAATATTATGAGAGATGTTTCAGATGAAAGCAACAACCAAAGTGGGATATACAGTTGTTCTAACCTTGAAATCAGTAATGGTGGAAGTACTTTGGTTGATCATGCCGTTTCAAGTACTATTCTTGATGATTATTGCACATTGAAAGATGCTGACTTCCCACATCCTTCAGATTGCTTGGCTGGGAACTTCAGTTCGAGCCAAGATGTTCAGTCTCAGATTACCTCTGCTAGTCTGGGAGATTCTCAGGCTTTCTCTAGGCAAGAGTTCCATGATAATTCAGGTGGTACATCCTCATGCAATGTGGATTTTGACGAGGGCAGTCTTCTGCAGAATGGCTCATGGAAGCAAGTGGTACCGCCCTTGAGAACTTACACGAAGGTCCAGAAGGCGGGATCTGTTGGGAGATCTATTGATGTCACTAGTTTTAAGAACTACGACGAACTGTGCTCTGCTATCGAATGTATGTTCGGACTTGAGGGGTTGCTTAATGACCCAAGAGGGTCGGGATGGAAACTGGTTTATGTGGATTATGAGAATGATGTCCTGCTTATTGGTGATGATCCGTGGGAGGAATTTGTTAGCTGTGTACGGTGTATCAGAATCTTGTCACCTTCAGAAGTTCAGCAAATGAGCGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAAAGTATCAATTGCTCCATGTCAGAAGATCCTGGCCTCAAATTTATCTGGGTATGCGAGGTTCACGATGGAGCCATATCTTTGTTGCCTGTCTTTCATTTGCATATTTCCATTGTCTAG 2913 44.8 MGSVEEKLKTSGGLINNGPQTNLLDEMKLLKEMQDQTGARKAINSELWHACAGPLVSLPHVGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVQNVTLHADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHGGFLGETDWGSLVKRPMLRVPENIRGDLSYAPTLCSEPLMKMLLRPQMVNLQGTTLQQDSVNNLVKIQNVDMQPVTKMQQLIAASPGNQNHHHHPAPTQSDVINPNSSPKENLPGNVHTSAAIESEAPTAADLDKAKYERDHSTNQSNPLPSVGDCGEEKLTGNEVNMQTLVNQLSFVNQNQIPMQLQSVSWPMQPQLESLIQHPQPTDMPQPEFTSSNGLISSLDGDGCLINPSCLPLPGVMRSPGNLSMLGLQDSSIVFPEAPNFPLPSTGQDMWDPLNNIRFSSQTNHLVSFSHPDVSNINCMANANIMRDVSDESNNQSGIYSCSNLEISNGGSTLVDHAVSSTILDDYCTLKDADFPHPSDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSGGTSSCNVDFDEGSLLQNGSWKQVVPPLRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQSINCSMSEDPGLKFIWVCEVHDGAISLLPVFHLHISIV 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29905794 29910628 + CcPI632755_05g020920.1 Cco05g2092 179720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2092 970 Pfam AUX/IAA family 831 918 IPR033389 -
Cco05g2092 970 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677(InterPro)
Cco05g2092 970 Gene3D - 827 919 - -
Cco05g2092 970 FunFam Auxin response factor 826 919 - -
Cco05g2092 970 FunFam Auxin response factor 313 385 - -
Cco05g2092 970 Gene3D - 313 385 - -
Cco05g2092 970 Gene3D - 147 250 IPR015300 -
Cco05g2092 970 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 922 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco05g2092 970 ProSiteProfiles PB1 domain profile. 830 914 IPR053793 -
Cco05g2092 970 Pfam Auxin response factor 275 358 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco05g2092 970 SUPERFAMILY CAD & PB1 domains 832 909 - -
Cco05g2092 970 SUPERFAMILY DNA-binding pseudobarrel domain 136 278 IPR015300 -
Cco05g2092 970 MobiDBLite consensus disorder prediction 484 515 - -
Cco05g2092 970 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677(InterPro)
Cco05g2092 970 FunFam Auxin response factor 147 251 - -
Cco05g2092 970 SMART B3_2 149 251 IPR003340 GO:0003677(InterPro)
Cco05g2092 970 MobiDBLite consensus disorder prediction 534 556 - -
Cco05g2092 970 CDD B3_DNA 148 249 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0798 Cco-Chr3:8515924 Cco05g2092 Cco-Chr5:29905794 2.00E-173 dispersed
Cco05g2092 Cco-Chr5:29905794 Cco11g0155 Cco-Chr11:1637219 2.90E-173 dispersed
Cco05g2092 Cco-Chr5:29905794 Cco04g2271 Cco-Chr4:36246732 1.80E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59342 PF02309 AUX_IAA 1.10E-09 CL0072 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2092 K14486 - csv:101216825 1804.26