Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2095 ATGTCTACGCTCGACGCCGGTTCCAAGGTCGAGGAGGTTAAGGAGAAGGAAGAGAAGGCAGGGGAGCTTTTGTTCTGTGGTGCTACCTGCTGGGATATAATTGGTCGGAAAAAAGGTTCCGTTGAAGGCAACTTGGTCTCTCCCACTCGCCTTCGCCCGCTCGTGGGCGTTGACATTCGTTTTGTTGCTGCTGGTTGCACATCGTGTCATTGTGTGGCATTGGACGTGGAAGGGCGTTGCTATACCTGGGGACGGAATGAGAAAGGTCAATTGGGTCATGGAGATTTGATTCAGCGAGATAGGCCTACTATAGTATCTGGCCTTTCGAAGTACAAGGTGGTTAAAGCTGGAGCAGGGAGAAACCACACTGTGGTGGTCACTGAGGATGGAAATTCCCTATCCTTCGGTTGGAACAAACATGGCCAGTTGGGTTCAGGCTCAGTAAAAAATGAGATTGAGTCATCTCCTGTGCGTTGTCTCGTTTCTGAAGTGAAAAATACTGCCTGTGGGGGTGAATTCACCGTGTGGTTATCATCTATTGAAGGAGCTTCCATACTCACTGCGGGTCTTCCTCAGTATGGACAGCTTGGTCATGGAACAGATAATGAGTACAACACAAAGGATAGCTCGGTAAGACTTGCTTACGAAGCCCAACCACGCCCCCGAGCAATTGCTTCCCTTTCTGGAGAAAAGATTGTTAAAGTTGCATGTGGAACGAATCATACAGTGGCTGTGGATTCTAATGGCTATGTCTACACGTGGGGCTTTGGCGGTTATGGAAGACTTGGGCATAGAGAGCAGAAGGATGAATGGGCCCCCCGACGTGTCGATGTATTCCAGAGGAAAAATACTTTGCCTCCTGATGCTATCATTTCAGCAGGGTCTGTGAACTCTTCTTGTACTGCAGGTGGAGGGCAGCTTTATATGTGGGGAAAAATAAAAAATGCCGGAGATGACTGGATGTATCCCAAACCTCTCATGGATTTAAGTGGATGGAATATAAGATGCATGGATTCGGGCAACATGCACCATTTTGTGGGTGCGGATAACTCATGCATAAGTTGGGGCCATGCACAATATGGAGAGCTTGGATATGGCCCAATGGGTCAGAAGTCTTCGGCGGTACCCAAAAAGGTTGATATCCTGGAGAACATGCATGTCATAAGTGTTGCATGTGGTGCTGGACACTCTATGGTGGTTGTTGATAGAACAAATGTAGCTGATCGACTTGATCAGCTTGATATACACGATGGCAAAGCTTTTGATGAAGAGAATGCAGTATCGGAAGCGTTACCACAGAGTAAAGGTTCAGCCATCAAGCCAACTCCAAAGGCTGCTAAAGCATCTCAGAATGCCAAGAAGAGGAAGAAATCAAAAAATTCGTCTGACTCGGAGGAAGAAGAGGAGGAAAATGAAGATGGTGACAGCAGTGATGAAGAGGCCAACGGGCTATCAGATACGAGCGAACAGTATGGAAGCAAAAGTAAGGGTAGAGGTAGAGGAAAGGGTAGTAAAAACTCATCCAGTGGAGGGAAAGGCAGTGGTCGTGGACGGGGTCGTCCCCCATCGAACAACAAGAAACCAGCAGCTTCTCAAGGAAAAGCAGTAGGAGCTAAGAGAGAACTTCAGCAACGTTTTTTGAGTTTTGAAGATGATTGCGTACGACATCCGATATTTGACGAGTCTCGATGGAATTTGTGCTGGGGCCAATTCGAGCAATCATGTTTGCTTCTAAAGCAAGGAAGGGTTCATCTTGCTCCTAACCTTCATAAAGCAAGGTTCACAGTAACATCTTATGTTTGCCATATTGGTAACACTATGGGTCAGATCCCCGACCACAGCATCCCGCAAGAGAAGGCTCCTGGGGCTTGTGGTGGGCGTAGTAATTTCAAAATCATCTGTGAAACAGCCGGTGAAAGGTTTGCAGCTATGGGGAAGTCTACTTCGTGCTTTAAGATAATTGCGTGCGGTGGCGATTCGAGGGAGAAAGATGACATTGATATTCCTGAGAGTAAGCGTTTGAATGACAAACAAGGCTGGAGTTTTCGAAAGAGATCTAGCCGGCAACGAGTACTAAGCAACACTGTGATAGCTGAAATTCCATCTCCTGGAAATAAAGAGAGCTTTGATACTGCTAACATTAACTTCCAGCCACCAACTAACGGTTCAATAGTAGAAAAAGATCCTGGTTTGCAGTGCGCAAGCGAGAAACCTCAATTACAGAGTACTGAAAATCTCAAGGAATCTGAAGCTGTTGATGTCATTCAAAAGGAGAGTAAAGTTGATGTTGATCTCGAGGAACGCAGCGTTATTATTATCCAGACTGTTGTCAGAGGGTGGTTGGCCCGAGGAGAGCTTCTGAAGCTTAAGAATGTGGTTAAGTTGCAAGCTGCTATCCGTGGGTACTTGGTCAGGAAACATGCTGTTGAAACTCTTCGCTGTATTAAGGCCATCATTAAATTGCAAGCTCTTGTGCGTGCACGTTGTGCCCGTTTGGCACTTGAACAGTCACATTCTGAAGAACTAAATGTCAAGCGTACAGAGGATAACAATACTTATAAGACCTTGGAGAAGGAAAGGTTGAGGAAATCAACTGAGACTTACGTCTCAATTGAGAAATTACTTGGCAACAGCTTTGTTCGACAGCTGCTCGAGTCTACATCAGTCACGGGACCTATCAACGTTAGTTACCATCATTCTAAATCTGAGACTACTTGGAAATGGTTGGAGAGATGGACGTCTTTTTCATCAGTCGATGTTCTGGAGACAAAGGAAGCAGAGTTCATGACAGGGGAGCAAAGAAAAGAGAAGAAAGAAAAACCGTGTGTGTCTGAAGTTAGTGCTGGGATTGACTCTAATGTTCTTTGCAAGTCAGCTGATTCAAGAAGCTGCATTGGGGAATCGGTTGTGCATTCTGAAAGTGAAGATAACTTGATTACTTATGATATGGACAGTGCAGAGTTTCAGCCATGCCAACTTACCTCTTCCATGACTGAGGGTTTGGAGCAGGTATGGCTTAAGGAGGATACAGATGTCTCGAATGTGAAAGAGACCTTGATTAAGGCAAATTCTCTCCCAGATCAGAGTATGCAATTGGTTGCAGATTCTCAGTTGCAGTATAACAGTCATACAGAATTCCAGCAAAACAAGACATCGACTGGGATGTTTCCAGAACAACCAGAGGTTAAGGAGAAAAAGGCTATCTTTGGTTCAAGAAGGGCAAGTAATCCAGCTTTCATTGCTGCCCAGTCCAAATTTCAAGAGCTGAGTTCCATGGAAAGTACAGGTAGATCAATCAGTTCAACATATCAAGAAACTGGGGCAGAGTCTTGCTTTGGTGCTACGTCATCTGCTTCAGGTACTGCACAAGACTTCATCACAAATGGATCCAGGACGGTTCGAGTTAGTGGCTCTGACTGTGGGACTGAACTTTCTATTACCTCTACTCTTGATTCACCTGATTTATCCGAAGCTGGAGCCTTCGAATATGATCATGAAACCAATGTAACTGAGATATGTGTCCATGACCGTAGCAGCAAGAAGAGCACAGAAATTGACGTGGGTGGTGCTCCCTCCAGTCTAGTGTCAAACTTATATCAACCTCTTCTGGGGTCTCCAGAAAAGTCTGGTGTTATCTCGGGCGAATCCATCAACAAAATAACAGTGAACTCTACTCAAAATGAAGTGAAGCCGGACGTAAATGCATCTGATCTGCAGATAGAACAGTATGCTGAAACAGATAATTACAGGTTGTCCCCATCGGCCTCTTCAAGAAGCCATGTCGCTCATCTGGAATCCCAAGGAACACCTTCTAGTCAGATCTCAATAAAATCTAATAAGAGAAAAACTGATGCGAGCAGAAGCAACCAAACGCGTAAGTCCCTCACTGCTGGTAAGAAATCACCCTCAAATTTGCTTCGCAATGTTGATTCGCCAAATCATTTGGAACCTTTGCCTAAAGATGAGAAGATTGAAAAGAGACGCAATTCCTTTGGGTCAACAAGATCTGATCATATTGAAGAAGAGTCAAGAGAAAGCAGTACTAATCAATCTCTCCCTCATTTCATGCGAGCTACAGAGGCTGCTAGAGCTAAGGTGCAGTTAAATAATTCTCCAAGATCCAGTCCAGATGTCCAAGATGCAAAAATCTACATCAAGAAGAGGCATTCCTTACCTGGTGCCAATGGAAGGCAAGGGTCTCCACGAATCCAAAGATCAACGTCTCAAGCACAAAAGAGCGAAAAGGGAAATGCCTCAAAGACCAAGAATATGACTTCATTAGATCTGAAGGGTGAATTTGGTTGTGATTAG 4311 45.0 MSTLDAGSKVEEVKEKEEKAGELLFCGATCWDIIGRKKGSVEGNLVSPTRLRPLVGVDIRFVAAGCTSCHCVALDVEGRCYTWGRNEKGQLGHGDLIQRDRPTIVSGLSKYKVVKAGAGRNHTVVVTEDGNSLSFGWNKHGQLGSGSVKNEIESSPVRCLVSEVKNTACGGEFTVWLSSIEGASILTAGLPQYGQLGHGTDNEYNTKDSSVRLAYEAQPRPRAIASLSGEKIVKVACGTNHTVAVDSNGYVYTWGFGGYGRLGHREQKDEWAPRRVDVFQRKNTLPPDAIISAGSVNSSCTAGGGQLYMWGKIKNAGDDWMYPKPLMDLSGWNIRCMDSGNMHHFVGADNSCISWGHAQYGELGYGPMGQKSSAVPKKVDILENMHVISVACGAGHSMVVVDRTNVADRLDQLDIHDGKAFDEENAVSEALPQSKGSAIKPTPKAAKASQNAKKRKKSKNSSDSEEEEEENEDGDSSDEEANGLSDTSEQYGSKSKGRGRGKGSKNSSSGGKGSGRGRGRPPSNNKKPAASQGKAVGAKRELQQRFLSFEDDCVRHPIFDESRWNLCWGQFEQSCLLLKQGRVHLAPNLHKARFTVTSYVCHIGNTMGQIPDHSIPQEKAPGACGGRSNFKIICETAGERFAAMGKSTSCFKIIACGGDSREKDDIDIPESKRLNDKQGWSFRKRSSRQRVLSNTVIAEIPSPGNKESFDTANINFQPPTNGSIVEKDPGLQCASEKPQLQSTENLKESEAVDVIQKESKVDVDLEERSVIIIQTVVRGWLARGELLKLKNVVKLQAAIRGYLVRKHAVETLRCIKAIIKLQALVRARCARLALEQSHSEELNVKRTEDNNTYKTLEKERLRKSTETYVSIEKLLGNSFVRQLLESTSVTGPINVSYHHSKSETTWKWLERWTSFSSVDVLETKEAEFMTGEQRKEKKEKPCVSEVSAGIDSNVLCKSADSRSCIGESVVHSESEDNLITYDMDSAEFQPCQLTSSMTEGLEQVWLKEDTDVSNVKETLIKANSLPDQSMQLVADSQLQYNSHTEFQQNKTSTGMFPEQPEVKEKKAIFGSRRASNPAFIAAQSKFQELSSMESTGRSISSTYQETGAESCFGATSSASGTAQDFITNGSRTVRVSGSDCGTELSITSTLDSPDLSEAGAFEYDHETNVTEICVHDRSSKKSTEIDVGGAPSSLVSNLYQPLLGSPEKSGVISGESINKITVNSTQNEVKPDVNASDLQIEQYAETDNYRLSPSASSRSHVAHLESQGTPSSQISIKSNKRKTDASRSNQTRKSLTAGKKSPSNLLRNVDSPNHLEPLPKDEKIEKRRNSFGSTRSDHIEEESRESSTNQSLPHFMRATEAARAKVQLNNSPRSSPDVQDAKIYIKKRHSLPGANGRQGSPRIQRSTSQAQKSEKGNASKTKNMTSLDLKGEFGCD 1436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29926452 29938493 - CcPI632755_05g020950.1 Cco05g2095 179723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2095 1436 SUPERFAMILY RCC1/BLIP-II 20 403 IPR009091 -
Cco05g2095 1436 MobiDBLite consensus disorder prediction 427 538 - -
Cco05g2095 1436 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 183 248 IPR000408 -
Cco05g2095 1436 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 249 304 IPR000408 -
Cco05g2095 1436 Gene3D - 763 815 - -
Cco05g2095 1436 MobiDBLite consensus disorder prediction 465 482 - -
Cco05g2095 1436 Pfam Protein of unknown function (DUF4005) 1346 1414 IPR025064 -
Cco05g2095 1436 Pfam Regulator of chromosome condensation (RCC1) repeat 129 175 IPR000408 -
Cco05g2095 1436 Pfam Regulator of chromosome condensation (RCC1) repeat 186 245 IPR000408 -
Cco05g2095 1436 Pfam Regulator of chromosome condensation (RCC1) repeat 351 400 IPR000408 -
Cco05g2095 1436 Pfam Regulator of chromosome condensation (RCC1) repeat 77 126 IPR000408 -
Cco05g2095 1436 Pfam Regulator of chromosome condensation (RCC1) repeat 248 282 IPR000408 -
Cco05g2095 1436 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 390 400 IPR000408 -
Cco05g2095 1436 Pfam IQ calmodulin-binding motif 767 783 IPR000048 GO:0005515(InterPro)
Cco05g2095 1436 Pfam IQ calmodulin-binding motif 790 807 IPR000048 GO:0005515(InterPro)
Cco05g2095 1436 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 130 180 IPR000408 -
Cco05g2095 1436 MobiDBLite consensus disorder prediction 1388 1436 - -
Cco05g2095 1436 PANTHER PROTEIN RCC2 9 541 IPR028641 GO:0016020(PANTHER)|GO:0031267(PANTHER)|GO:0034260(PANTHER)
Cco05g2095 1436 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 78 129 IPR000408 -
Cco05g2095 1436 ProSiteProfiles IQ motif profile. 788 817 - -
Cco05g2095 1436 Gene3D - 158 417 IPR009091 -
Cco05g2095 1436 Coils Coil 839 859 - -
Cco05g2095 1436 Gene3D - 5 157 IPR009091 -
Cco05g2095 1436 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 116 126 IPR000408 -
Cco05g2095 1436 MobiDBLite consensus disorder prediction 1314 1347 - -
Cco05g2095 1436 PRINTS Chromosome condensation regulator RCC1 signature 113 126 IPR000408 -
Cco05g2095 1436 PRINTS Chromosome condensation regulator RCC1 signature 251 265 IPR000408 -
Cco05g2095 1436 PRINTS Chromosome condensation regulator RCC1 signature 79 95 IPR000408 -
Cco05g2095 1436 PRINTS Chromosome condensation regulator RCC1 signature 132 148 IPR000408 -
Cco05g2095 1436 PRINTS Chromosome condensation regulator RCC1 signature 235 251 IPR000408 -
Cco05g2095 1436 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 235 245 IPR000408 -
Cco05g2095 1436 SMART iq_5 813 835 IPR000048 GO:0005515(InterPro)
Cco05g2095 1436 SMART iq_5 788 809 IPR000048 GO:0005515(InterPro)
Cco05g2095 1436 SMART iq_5 765 787 IPR000048 GO:0005515(InterPro)
Cco05g2095 1436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 768 833 IPR027417 -
Cco05g2095 1436 MobiDBLite consensus disorder prediction 1250 1279 - -
Cco05g2095 1436 MobiDBLite consensus disorder prediction 1289 1310 - -
Cco05g2095 1436 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 403 IPR000408 -
Cco05g2095 1436 ProSiteProfiles IQ motif profile. 766 794 - -
Cco05g2095 1436 MobiDBLite consensus disorder prediction 1397 1426 - -
Cco05g2095 1436 MobiDBLite consensus disorder prediction 1250 1353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2095 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2095 Cco-Chr5:29926452 Cco11g0553 Cco-Chr11:5868280 1.20E-18 dispersed
Cco05g2095 Cco-Chr5:29926452 Cco08g1623 Cco-Chr8:27744965 1.00E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1072 Blo01g01588 Blo12g00893 Bda01g00499 Bda03g00278 Bpe02g00361 Bpe04g00234 Bma04g00236 . Cmo05g00299 Cmo12g00368 Cma01g01954 . Car01g01526 Car12g00395 . . Cpe07g00375 Bhi04g00241 . . . Hepe10g0136 . . . . . . . . . Cone4ag1957 Cone7ag1870 Cone17ag1390 Cone20ag0091 Lsi04g01722 Csa03g04258 Chy04g00437 Cme03g01895 . . . . . . . . Sed11g1080 Cmo01g02013 . Cma12g00418 Cma05g00294 Car05g00243 . Cpe11g00244 Cpe02g00087 Bhi09g02116 Tan01g4991 Cmetu03g0968 . Hepe01g1635 Mch11g0138 . Cla05g01894 Cam05g2029 Cec05g2038 Cco05g2095 Clacu05g2020 Cmu05g1900 Cre05g2024 Lsi08g01337 Csa02g02119 Chy03g01398 Cme04g00491
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002353 2 2 0 1 2 2 3 2 2 2 1 2 3 2 2 2 2 4 3 2 2 2 2 2 2 2 1 4 3 1 62