Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2097 ATGAGTAAGGGGCCCCCGCCGGATCCCGTGGCCGTGCTCCGAGGTCATCGGGCCTCTGTCATGGACGTTTCTTTTCATCCATCGGAACCTCTTCTCTTTTCGGGCTCTGCAGATGGTGAGTTGCGTATATGGGACACGGTCCAGCATAGGACGGCATCATCAGCATGGGTGCATAGTGCTGCTCACGGAATTATTAGTGTTGCTTGCAGTCGTTCTATTGGGACAAATAGAGTTGTCAGCCAGGGTAGGGATGGAACTGTAAAGTGCTGGGATATTGATGATAGGGCTCTGTCCAGAGTTCCCTCTGTCACAATCAAGACAAATGCCTATCACTTTTGCAAACTCTCCTTGGTGAAGCAGCCTTCTTCTGATTTTTCAAGCCACCATGATGGTCCTAAGTGTATTAATGATCGAGATGAGAAGCCTGTTGATGCGGAAACTTTGGGCTGCAGTGGAGATAAGGCTCAAGGATTTTCTACTGAGCACGCATGCAGATCAGAAGCTGATGGGCTGAAGTATGTGGCTGTCGCAGGGGAGCGATCTTCAGAGGTTGAAATTTGGGATCTGAATGCTGGGGATAGGTTGCTACGACTCCCTTCAAACGGGGAAGGGGATTGCCCAAATATCTCTACCAAGGATAGAGGATTGTGCATGGCAGTTCAAGCCTTTTTACCGTCTAAATCTCAGGGATTCTTAAATGTCTTGTCTGGATACGAGGATGGTTCCATGCTTTGGTGGGATCTTAGGAATCCGGCAGTCCCAGTAACATCAGTGAAGTGTCATTTAGAGCCAGTTTTAAGCATTTGCGTTGATGGATCGTGCCATGGTGGTATCTCAGGAGCTGCAGATGACAAAGTTGTGATGTTTAGTTTGGATCATTCCACGGGGACATGCCTGGTGAAGAAAGAAATTACTTTGGAACGGCCTGGGATAGCAAAGGTCTCTATTCGGCCAGATAACAAGATTGCTGCAACTGCTGGCTGGGATCACAGAGTGCGGATATATAATTATCGAAAAGGAAATCCTCTTGCTATATTGAAGTACCATCAGGCCTTGTGTAATGCTGTATCATACTCGGACGACTGTAAGTTATTGGCATCTGCATCAGACGACAGAACTAATTCAAAGGAGATTGAGTTTGATCGCCGCCGCAAGACCGTTCTTTTAAAAGATATGATTGAGCAAACGGTGGTTCTGTTCTTCTGCCATGTGTTGCTCCTCGCTGGAATGTCTTTTACCCAGGCCGCCAACGCCGGCCACTGGCAACTCCTGCAGGAAACCATCGGCATTTCAGCCATGCACATGCAGCTACTCCACAATGATCGTGTCGTCATGTTCGACAGCACTGACTTTGGCCCATCCAACTTATCGTTCCCCAGATCAAGATGCACAAGATCCTACAATGGACGTCGAATCAGGTACGACTGTACTGCCCATTCTGTTGAGTACGACGTAGCCACCAACACATTCCGGCCACTCGCAGTTCAGACAGATATGTGGTGCTCATCCGGTGGAGCCATGCGCGACGGCGCTCTGGTTCAAACCGGCGGTTTCAAAGCCGGCGACCGGACCGTCAGGATTTTCAAACCTTGCCCAAGATGTGATTGGGAAGAGATTCCGATGGGGTTACTTACCCGTCGGTGGTATGCCACCAACCACATTCTCCCCGACGGTAGCCAGATCATCATCGGCGGCCGGAAACGCTTCAGCTATGAATTCTTTCCTAAACCTGCAGCGTTTTATTGGCATTTGGCAAAGACTAAATCTGCTCCAAGGGCATATAGTTTGCCGTTCTTGGTGCAAACCAACGATGGCCATATCGAAAACAATTTGTACCCATTTGTGTTTCTTCATATCGACGGGAGCTTGTTCATCTTCGCAAATAATCGAGCGATCTTATTCGATTACTCCAAGAACAAGATTCTCAAAACCTTCCCAGAAATTCCAGGCGGCGATCCAAGGAATTACCCGAGTACTGGATCGGCGGTGATTCTTCCATTGGATTTGCAGGCGAAATTGATTGAAGTCGAGGTAATGGTCTGCGGTGGAGCTCCGAAAGGAGCTCATATAAAAGCCCGCAACGGAGTTTTCGTCGAAGCACTGAACACATGCGCAAGAATCAAAATTACCAGTCCAAATCCTAAGTGGGTTCTTGAGATTATGCCACTTTCTCGAGTTATGGGCGACATGTTGTTACTTCCAAACGGCAACGTTTTGTTGATCAACGGCGGATCGTTCGGGACCGCCGGCTGGGAACTCGGCCGGAACCCGGTTCTCAACCCGGTTCTTTACCGACCCAATAACCCACTCGGTTCAAGATTCGAATTGAACGACCCGAGTACTACCCCTCGTATGTATCATTCAACGGCGATCTTACTTCGTGATGGCCGGATTCTTGTCGGCGGGAGCAACCCACAGCCGGGTTACAATTTTTCCGGCGTTCTTTTTCCGACGGAACTTAGCTTAGAAGCATTTCATCCTGCATATCTGGACCCTCAATTCGCAGCATTGCGTCCCACAATAATAACACCCATATCCCAAATCATGCTTTTTCATGGACAGAGATTGAAGGTGCGGTTTACAGTGATCGACGAATTGGATCCGACGAAAGTCTCAGTGACCATGTTGGCTCCGCCGTTCAATACCCATTCGTTCTCGATGAACCAACGGCTGTTGGTGCTCGGCGGTGGCAACGTAACGACGAGCATATGGCCGGATCTGATGTATGAAGTTGAGGTTAACGTTCCTGTTTGCGGTAATATTGCACCGTCTGGGTTTTATATATTATTTGTTGTTCATCAATGCGTTCCAAGTGAAGGAATTTGGGTTCAAATACTTTGA 2841 48.47 MSKGPPPDPVAVLRGHRASVMDVSFHPSEPLLFSGSADGELRIWDTVQHRTASSAWVHSAAHGIISVACSRSIGTNRVVSQGRDGTVKCWDIDDRALSRVPSVTIKTNAYHFCKLSLVKQPSSDFSSHHDGPKCINDRDEKPVDAETLGCSGDKAQGFSTEHACRSEADGLKYVAVAGERSSEVEIWDLNAGDRLLRLPSNGEGDCPNISTKDRGLCMAVQAFLPSKSQGFLNVLSGYEDGSMLWWDLRNPAVPVTSVKCHLEPVLSICVDGSCHGGISGAADDKVVMFSLDHSTGTCLVKKEITLERPGIAKVSIRPDNKIAATAGWDHRVRIYNYRKGNPLAILKYHQALCNAVSYSDDCKLLASASDDRTNSKEIEFDRRRKTVLLKDMIEQTVVLFFCHVLLLAGMSFTQAANAGHWQLLQETIGISAMHMQLLHNDRVVMFDSTDFGPSNLSFPRSRCTRSYNGRRIRYDCTAHSVEYDVATNTFRPLAVQTDMWCSSGGAMRDGALVQTGGFKAGDRTVRIFKPCPRCDWEEIPMGLLTRRWYATNHILPDGSQIIIGGRKRFSYEFFPKPAAFYWHLAKTKSAPRAYSLPFLVQTNDGHIENNLYPFVFLHIDGSLFIFANNRAILFDYSKNKILKTFPEIPGGDPRNYPSTGSAVILPLDLQAKLIEVEVMVCGGAPKGAHIKARNGVFVEALNTCARIKITSPNPKWVLEIMPLSRVMGDMLLLPNGNVLLINGGSFGTAGWELGRNPVLNPVLYRPNNPLGSRFELNDPSTTPRMYHSTAILLRDGRILVGGSNPQPGYNFSGVLFPTELSLEAFHPAYLDPQFAALRPTIITPISQIMLFHGQRLKVRFTVIDELDPTKVSVTMLAPPFNTHSFSMNQRLLVLGGGNVTTSIWPDLMYEVEVNVPVCGNIAPSGFYILFVVHQCVPSEGIWVQIL 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29952810 29959265 - CcPI632755_05g020970.1 Cco05g2097 179725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2097 946 SUPERFAMILY E set domains 835 945 IPR014756 -
Cco05g2097 946 Gene3D Immunoglobulins 837 946 IPR013783 -
Cco05g2097 946 Pfam Glyoxal oxidase N-terminus 433 683 IPR009880 -
Cco05g2097 946 SUPERFAMILY Galactose oxidase, central domain 466 831 IPR011043 -
Cco05g2097 946 Gene3D - 4 110 IPR015943 GO:0005515(InterPro)
Cco05g2097 946 SMART WD40_4 49 91 IPR001680 GO:0005515(InterPro)
Cco05g2097 946 SMART WD40_4 6 45 IPR001680 GO:0005515(InterPro)
Cco05g2097 946 SMART WD40_4 297 336 IPR001680 GO:0005515(InterPro)
Cco05g2097 946 SMART WD40_4 251 290 IPR001680 GO:0005515(InterPro)
Cco05g2097 946 SMART WD40_4 339 374 IPR001680 GO:0005515(InterPro)
Cco05g2097 946 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Cco05g2097 946 Gene3D - 415 835 IPR037293 -
Cco05g2097 946 Pfam Galactose oxidase-like, Early set domain 838 945 IPR015202 -
Cco05g2097 946 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Cco05g2097 946 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Cco05g2097 946 PRINTS G protein beta WD-40 repeat signature 234 248 IPR020472 -
Cco05g2097 946 PANTHER SECRETED PROTEIN-RELATED 398 945 - -
Cco05g2097 946 Gene3D - 154 375 IPR015943 GO:0005515(InterPro)
Cco05g2097 946 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515(InterPro)
Cco05g2097 946 Pfam WD domain, G-beta repeat 340 373 IPR001680 GO:0005515(InterPro)
Cco05g2097 946 Pfam WD domain, G-beta repeat 311 336 IPR001680 GO:0005515(InterPro)
Cco05g2097 946 SUPERFAMILY WD40 repeat-like 5 373 IPR036322 GO:0005515(InterPro)
Cco05g2097 946 CDD E_set_GO_C 834 945 IPR015202 -
Cco05g2097 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2097 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2097 Cco-Chr5:29952810 Cco08g1620 Cco-Chr8:27711405 4.60E-208 dispersed
Cco05g2096 Cco-Chr5:29944300 Cco05g2097 Cco-Chr5:29952810 9.20E-219 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1053 . . . . . . . . . . Cma01g01949 . Car01g01523 . . . . . . . . . . . . . . . . . . . Cone7ag1864 . . Lsi04g01719 . . . . . . . . . . . Sed01g2508 Cmo01g02010 . . . . . . Cpe02g00090 Bhi09g02120 Tan01g4986 Cmetu02g1305 . Hepe01g1640 Mch11g0142 . Cla05g01896 Cam05g2032 Cec05g2041 Cco05g2097 Clacu05g2024 Cmu05g1904 Cre05g2027 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000551 5 3 4 6 4 4 4 4 4 3 2 3 4 3 5 4 4 4 4 4 3 3 5 3 2 3 3 5 3 1 109