Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2100 ATGGCTCGTGGGAAGATCCAGATCAAGAGAATCGAAAACCCCACAAACAGGCAAGTCACTTACTCCAAACGACGCAACGGCCTCTTCAAAAAGGCCAACGAACTCACCGTCCTCTGCGATGCTAAAGTCTCCATTATCATGTTCTCTAGCACTGGAAAGCTCCACGAGTATATCAGCCCTGCCACTTCGACCAAGGAGCTTTTCGATCAGTACCAGAAGACTTTAGGCGTTGATTTATGGATCTCTCACTATGAGAGAATGCAAGACAATCTGAAGAAGCTTAAAGATGTGAATCGAAATCTCCGCAAGCAGATCAGGCAGAGGATGGGGGAATGTATGAATGATCTGAGTTTTGAAGAACTGCGCTGTCTTGAGCAAGATATGGATAATGCTGTCAGGATCATCCGTGAACGCAAGTACCGGGTGATACTAAACCAGATTGAAACGCACAAGAAGAAGTTAAAGAGCGTGGGACAAATACACAAGAGTCTTCTCCAGGAGTTTGATATTGCAACAGAGGAAGATCCACATTATGGGCTGGTAGACAATGGAGGAGTAGGAGTTGGAATAGGTGATTATGAGTCAATTATGGGATTCCCAGGCGGTGGACATCCTCGCATATTTGCATTGCGCCTCCAGCCCAACCACGGCCATAGCCATACCCACACCCACACCCACAACCATCCTAATATTCATGTTCATCCACCTTCAGATCTCACTACCTATCCACTACTCGAGTAG 741 46.56 MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPATSTKELFDQYQKTLGVDLWISHYERMQDNLKKLKDVNRNLRKQIRQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVILNQIETHKKKLKSVGQIHKSLLQEFDIATEEDPHYGLVDNGGVGVGIGDYESIMGFPGGGHPRIFALRLQPNHGHSHTHTHTHNHPNIHVHPPSDLTTYPLLE 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29975605 29979534 - CcPI632755_05g021000.1 Cco05g2100 179728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2100 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g2100 246 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco05g2100 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 198 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco05g2100 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g2100 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g2100 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g2100 246 Gene3D - 13 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g2100 246 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco05g2100 246 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g2100 246 FunFam MADS-box transcription factor 16 13 97 - -
Cco05g2100 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g2100 246 MobiDBLite consensus disorder prediction 215 246 - -
Cco05g2100 246 Pfam K-box region 82 168 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco05g2100 246 Coils Coil 84 111 - -
Cco05g2100 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g2100 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2100 Cco-Chr5:29975605 Cco11g1650 Cco-Chr11:29363717 6.60E-34 dispersed
Cco05g2100 Cco-Chr5:29975605 Cco06g0023 Cco-Chr6:239157 2.50E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59343 PF01486 K-box 1.20E-21 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2100 K09264 - csv:101218008 419.853