Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2102 ATGACGGATTTGTTCTATTTAGATCGGAAACAAGAGGAAGATCCAGAAGAAAGAGCAAGATCAGAACAACAATTGTTTTTATACAGCAGATCAAACAATAACCAAGAGATCTACTCCACCGGATTGCAGATATGGCCGCAATATACTCACAACCATCATCATCCTCAACAACAACAAAATGTAGAGAATTACATTTCCTTTGGAGTGGGGCCTAGTAGAACGACGAGCTTCATGATCAACGGCTCTGGTCATGACTTTGCTTCGAGATCAGGGTTTACTATGATGAGACATGGACATGGAGTAGGATCAGGAGGAGCGAGTGGGATGAATTGTCAAGACTGTGGGAATCAAGCTAAGAAGGATTGTTCTCATTTGAGGTGTAGAACTTGTTGTAAGAGTCGAGGGTTTCACTGTCAAACTCATGTTAAGAGTACTTGGGTTCCAGCTGCTAAACGTCGGGAACGCCAGCAACAACGTCACCAACAATTTCGAACAGATCAGTCAGATCAGATCACTCCCAAAAACCATAGACAACATCAACTATCTCTTCCTCTTACTACCAATTCGGGGTTGGAAGTAGCAAATTTTCAAGGTGAATTCAATTCGTCAGCTGTTTTCCGGTGCGTCAAAGTCAGTGCGATTGACAATGTAGAAGAACAATTAGCATATCAAACAGCTGTGAACATTGGTGGACATATGTTCAAAGGAATTCTTTACGACCAAGGTCCCGAAAGCAGTCAAAATTTGAGCACCGGCGGGGACGACAGAGAAGACGGTGGCCAAGGGTTGGATCTGGTGATCGGAGCATCCAACAGTGGTGGAAGAGTTAACCAAACCACCCCATTTGTGGAGTCTTCCATGTATCCCATCCCAATCAACACATTCGGCACTTCTAGTCCTAAGTCTCTTTTTGCCTCAACCAATCAAAATCCGGATGCTGTTGTGGATTTCCAGCTTTTTCTCATCACTCCCATCAAATAG 981 43.73 MTDLFYLDRKQEEDPEERARSEQQLFLYSRSNNNQEIYSTGLQIWPQYTHNHHHPQQQQNVENYISFGVGPSRTTSFMINGSGHDFASRSGFTMMRHGHGVGSGGASGMNCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQRHQQFRTDQSDQITPKNHRQHQLSLPLTTNSGLEVANFQGEFNSSAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDQGPESSQNLSTGGDDREDGGQGLDLVIGASNSGGRVNQTTPFVESSMYPIPINTFGTSSPKSLFASTNQNPDAVVDFQLFLITPIK 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29998011 30001835 + CcPI632755_05g021020.1 Cco05g2102 179730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2102 326 MobiDBLite consensus disorder prediction 1 21 - -
Cco05g2102 326 Pfam Domain of unknown function (DUF702) 108 244 - -
Cco05g2102 326 NCBIfam putative zinc finger domain, LRP1 type 110 152 IPR006510 -
Cco05g2102 326 NCBIfam LRP1 C-terminal domain 196 243 IPR006511 -
Cco05g2102 326 MobiDBLite consensus disorder prediction 150 181 - -
Cco05g2102 326 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 11 296 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cco05g2102 326 MobiDBLite consensus disorder prediction 163 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2102 Cco-Chr5:29998011 Cco05g2949 Cco-Chr5:36992417 3.70E-24 dispersed
Cco09g1462 Cco-Chr9:19842313 Cco05g2102 Cco-Chr5:29998011 5.50E-100 transposed
Cco04g1764 Cco-Chr4:32614116 Cco05g2102 Cco-Chr5:29998011 4.30E-52 wgd
Cco05g2102 Cco-Chr5:29998011 Cco07g0951 Cco-Chr7:21776844 1.60E-43 wgd
Cco05g2102 Cco-Chr5:29998011 Cco08g1643 Cco-Chr8:27910397 2.40E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59344 PF05142 DUF702 1.30E-58 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2102 K27807 - csv:101218246 437.187