Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2103 ATGGCTGATGGAGGATCAGTTTCTGGGTCAAGAATGTGGTGTTCAATTCCTGAGAAGCTTCAACTGCATGGCGCCATGTTGGCCTTGCAATTTGGCTATGCTGGCTTCCACGTTGTCTCAAGGGCTGCTCTTAATATGGGCATTAGTAAACTTGTCTTCCTAGTTTATAGGAACATCATTGCCTTTTTGCTTCTACTTCCCTTTGCATATTTCCTCGAAAAGAAGGAGCGCCCTCCCATTACTTTCAATTTTCTCCTTCAGTTCTTCCTCCTTGCCCTTGTTGGAATCACGGCAAATCAAGGGTTCTACTTGCTAGGTTTGGAGAACACGTCACCGACGTTTGCATCAGCTATACAAAACTCGGTTCCGGCCATTACATTCCTTATGGCTGCATTGCTCAGAATAGAAGAAGTGCGACTAAACAGAAAAGATGGTATAGCAAAAGTGATTGGAACGATATGCTGTGTTGCTGGGGCCACAGTGATCACTCTGTACAAAGGTCCAACAATATACAGCCCAGTTCATTCACTACAAACAGCTGCCACCACCACTAGCGCACCCATTTTCGCTTCTCTTGGGGACGCAACCGGGAAAAGCTGGACCCTTGGCTGTGTCTTTTTGATCGGTCATTGCTTGTCTTGGTCTGGATGGCTTGTTTTGCAAGCGCCCGTTTTGAAAAAATACCCAGCTCGTCTCTCTGTCACTTCTTATACTTGTTTCTTTGGGATAATCCAATTTATCATCATCGCTGCCATTGCGGAACGAGATGTTGAGGCTTGGCTCTTTCACTCCGGTGGTGAAATCTTTAGCGTCCTGTATGCGGGAGTGGTAGCTTCGGGAATTGCTTTCGCAGTGCAGACATGGTGTATTCAAAGAGGTGGGCCAGTGTTCGTTGCTGTTTACCAACCAGTTCAGACTTTGGTTGTCGCTGTCATGGCTTCCTTCGCCTTGGGTGAAGAGTTCTTCTTGGGAGGGATCATCGGGGCGGTATTGATCATCGCCGGCTTATACTTCGTCTTATGGGGCAAAAGCGAAGAGAGAAAATTTGCACTTGAGAAGGCTGCAATCCTCTCCACTCCGGACCACACTAACAACAGAACACCCCCACTCATCAAGCCCTCTATTACTCAGCCACTTCTCATCCACTCATCAAACGACAACGTTTGA 1167 47.22 MADGGSVSGSRMWCSIPEKLQLHGAMLALQFGYAGFHVVSRAALNMGISKLVFLVYRNIIAFLLLLPFAYFLEKKERPPITFNFLLQFFLLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAALLRIEEVRLNRKDGIAKVIGTICCVAGATVITLYKGPTIYSPVHSLQTAATTTSAPIFASLGDATGKSWTLGCVFLIGHCLSWSGWLVLQAPVLKKYPARLSVTSYTCFFGIIQFIIIAAIAERDVEAWLFHSGGEIFSVLYAGVVASGIAFAVQTWCIQRGGPVFVAVYQPVQTLVVAVMASFALGEEFFLGGIIGAVLIIAGLYFVLWGKSEERKFALEKAAILSTPDHTNNRTPPLIKPSITQPLLIHSSNDNV 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30023300 30026183 + CcPI632755_05g021030.1 Cco05g2103 179731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2103 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 345 - -
Cco05g2103 388 PANTHER WAT1-RELATED PROTEIN 25 352 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cco05g2103 388 Pfam EamA-like transporter family 202 340 IPR000620 GO:0016020(InterPro)
Cco05g2103 388 Pfam EamA-like transporter family 27 163 IPR000620 GO:0016020(InterPro)
Cco05g2103 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2103 Cco-Chr5:30023300 Cco06g1649 Cco-Chr6:27089218 1.70E-105 dispersed
Cco05g2103 Cco-Chr5:30023300 Cco08g1649 Cco-Chr8:27981629 5.70E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2103 - - - 0.0