Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2104 ATGGATAAAAAGGCCAGAAACACCACCAACGTTGCTCAGGCCAGCTCTCGCAAGGGCTGCATGAGAGGCAAAGGCGGCCCAGACAACGCCTCTTGCACTTTCAAAGGCGTCCGCCAGCGTACTTGGGGCAAATGGGTCGCTGAAATTCGCGAGCCCAACCGCGGCGCTCGTCTCTGGCTCGGCACATTTGACACCGCTCATGAAGCAGCACTGGCTTATGACGCTGCGGCTCGTAAGCTCTACGGCGCTGAAGCTAAGCTCAATCTCCCTCAAACTACTCATCGTCCTCCTCCTCATGAGCTGCCTCATCAGTTGGAACGCGCTGCCCAATCTCCCTCAATAATTGATTCTTCTCCCACCGCGACGTCCTCCTCCTCCTCCTCATCTCCAATCGGAGGGCTGTGGGGAAGTGAGAACGTGAATTTTGATGAGTCGATATGGAGAGAGGCTGTGATGTCCTTGGATTTTCCTATTATTCAAGATGATCAAGGGATTTTCTTTGATGGGGTCGGCAATTGGGACACTTTGCAGTGGTGCATGTGA 543 53.78 MDKKARNTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAALAYDAAARKLYGAEAKLNLPQTTHRPPPHELPHQLERAAQSPSIIDSSPTATSSSSSSSPIGGLWGSENVNFDESIWREAVMSLDFPIIQDDQGIFFDGVGNWDTLQWCM 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30029291 30029833 - CcPI632755_05g021040.1 Cco05g2104 179732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2104 180 SMART rav1_2 33 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2104 180 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2104 180 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2104 180 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2104 180 MobiDBLite consensus disorder prediction 89 131 - -
Cco05g2104 180 Pfam AP2 domain 34 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2104 180 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Cco05g2104 180 MobiDBLite consensus disorder prediction 110 131 - -
Cco05g2104 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 127 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cco05g2104 180 MobiDBLite consensus disorder prediction 1 32 - -
Cco05g2104 180 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677(InterPro)
Cco05g2104 180 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2104 180 CDD AP2 32 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2104 Cco-Chr5:30029291 Cco11g0613 Cco-Chr11:6571005 1.50E-30 dispersed
Cco05g2104 Cco-Chr5:30029291 Cco08g1651 Cco-Chr8:27991758 7.20E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59345 PF00847 AP2 3.00E-15 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2104 - - - 0.0