Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2104 | ATGGATAAAAAGGCCAGAAACACCACCAACGTTGCTCAGGCCAGCTCTCGCAAGGGCTGCATGAGAGGCAAAGGCGGCCCAGACAACGCCTCTTGCACTTTCAAAGGCGTCCGCCAGCGTACTTGGGGCAAATGGGTCGCTGAAATTCGCGAGCCCAACCGCGGCGCTCGTCTCTGGCTCGGCACATTTGACACCGCTCATGAAGCAGCACTGGCTTATGACGCTGCGGCTCGTAAGCTCTACGGCGCTGAAGCTAAGCTCAATCTCCCTCAAACTACTCATCGTCCTCCTCCTCATGAGCTGCCTCATCAGTTGGAACGCGCTGCCCAATCTCCCTCAATAATTGATTCTTCTCCCACCGCGACGTCCTCCTCCTCCTCCTCATCTCCAATCGGAGGGCTGTGGGGAAGTGAGAACGTGAATTTTGATGAGTCGATATGGAGAGAGGCTGTGATGTCCTTGGATTTTCCTATTATTCAAGATGATCAAGGGATTTTCTTTGATGGGGTCGGCAATTGGGACACTTTGCAGTGGTGCATGTGA | 543 | 53.78 | MDKKARNTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAALAYDAAARKLYGAEAKLNLPQTTHRPPPHELPHQLERAAQSPSIIDSSPTATSSSSSSSPIGGLWGSENVNFDESIWREAVMSLDFPIIQDDQGIFFDGVGNWDTLQWCM | 180 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 30029291 | 30029833 | - | CcPI632755_05g021040.1 | Cco05g2104 | 179732 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2104 | 180 | SMART | rav1_2 | 33 | 96 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2104 | 180 | Gene3D | AP2/ERF domain | 33 | 91 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2104 | 180 | PRINTS | Ethylene responsive element binding protein signature | 56 | 72 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2104 | 180 | PRINTS | Ethylene responsive element binding protein signature | 34 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2104 | 180 | MobiDBLite | consensus disorder prediction | 89 | 131 | - | - | |
Cco05g2104 | 180 | Pfam | AP2 domain | 34 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2104 | 180 | FunFam | Ethylene-responsive transcription factor 2 | 32 | 91 | - | - | |
Cco05g2104 | 180 | MobiDBLite | consensus disorder prediction | 110 | 131 | - | - | |
Cco05g2104 | 180 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 4 | 127 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Cco05g2104 | 180 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cco05g2104 | 180 | SUPERFAMILY | DNA-binding domain | 33 | 91 | IPR016177 | GO:0003677(InterPro) | |
Cco05g2104 | 180 | ProSiteProfiles | AP2/ERF domain profile. | 33 | 90 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2104 | 180 | CDD | AP2 | 32 | 92 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2104 | Cco-Chr5:30029291 | Cco11g0613 | Cco-Chr11:6571005 | 1.50E-30 | dispersed | |
Cco05g2104 | Cco-Chr5:30029291 | Cco08g1651 | Cco-Chr8:27991758 | 7.20E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59345 | PF00847 | AP2 | 3.00E-15 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2104 | - | - | - | 0.0 |