Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2105 ATGCTTTTCCGCTGTCTGGAAATGAGTTTTGCTTGGTCTACTGCTTTGCTCGAGTTTGTCATGCTGGGAGTTCCATATTTTAAGCTCATACAACCGTATCCTTGTATTAAAGATCCTTCATGGCCAACGGATTTTGGATTTGAGAGAATCAGAGCACTAAATCACCTGAGTTTGGCCCGTCCAAGGCGAAGGGGGCCGATTAGAGAGATCGAACTCCATGAAACATCTTCCTCCTCATCGCAACGGCGACTCCCAAATCGTGCTCCTCTTTTCCTCCGCCGCTCTCTTAACTTAGCCTTTCAATCAGTCAACTGCTTTATTCTCTCCGGCCGACGGGTTATCATGGACGTCGATCCTCGTTACTACGACCACATCGCTGTCAATGATGGTGATGTTCAGAACATTGTTTTATCCTACCTTGTTCATAATTGTTATAAAGAAACTGCAGAGTCGTTCACTACCTGTACTGGGCTTAAGCAGCACACGGATTATCTTGTTGACATGGAAAAAAGAAAAAGAATTTATGATTTTGCAGTAGAAGGGAATGCACTTAAGGCCATTGAGTTAACAGAAGAGGTAGCACATGGTTTACTCGAGAAGAATGAGGACCTGCATTTTGATCTTTTAAGTCTTCATTTTGTTGAACTTGTTTGCTCTAGGAAATGCACAGAGGCCCTGGAATTTGCTCAGGTCAAGCTTGCTCCTTTCGGAAAGTTGCATAAATATGTGGAAAAACTTGAAGATTTCATGGCCCTCCTTGCTTACGAAGAACCAGAGAAGTCTCCAATGTTTCATCTGCTTAGTGTGGATTACCGGCAAAGAGTAGCAGAAAGTCTAAATCGAGCAATTCTTGCACATGGAAATTTGCCGAGCTATACGCCAATGGAAAGGCTGATAAAGCAGGCAACTGTAGTTAGACAGTCCTTGAGCCAAGAGCTAGGCAAGAGTTCGGTCAGGCTCACAGCAACGAGAAGTAACCAGCTTCAGAACTTGTTGCCACCCATGGTTGTGGTATGGAAGATTGGTGTCCTCTCTTCATATGCTTTAGGTGCCCGTGTAGGCCATAAATTAAGTCATCTGGGTCTCCTGAGCTTGTTCGTTTCCTTTCAGTTTGGTGACCTCGTTGTCCTAATGGCTTGTCTTGTGATTGTACATGCTTCATGGTCCGGTTTTGGCGTGGAGGAACATGGGAGGAACTCTACTTTGCTGTCATATGCGATATCATCAAATGCCGGCTTTGTTTATCAAATGTGTCAATCTAATATTTGGGCTCAAATCAAGTGTCCAGTTACACCATGGGCTCATCGGTGGCACACCTCGCTGCCTGTTCATGATTCTGCAGTAGATCCCAAAGTCCCAACTCCGAATCATTTCCGTTTTTCCGGTATAATGGTATCGATTCTTTGTCTTCCATCGTCTTCCTCGTATGTTTTGCATGACAAGAGCTTCTCCTCTAGCTTCTTCCCAAAGAGGCGTTACGGAAACAGAGGTTTCCCTCGGTATTTGAGCTACTGCTCAATTACGTGCAAATTAGCGAGGGTCGTGGACTCTTCAGCTAACCCAGCTACATTGACAAAAGAAGCTCATAAGTATTTTGATCAAGCTATCATAACAGTTCGTTCAGGAGATGGAGGCCACGGTACAGTTCTTAGTATGCCCAACCAACAAACAAGCAAGTCCCAAGGAAAACATGGGAAGGAGAAGGACAAGGCGAAGAAGAAAAGTTTGTATAAAAGGGACTTTGATGGGTCTCTAATTCTTCCCATGGGTGGCCGTGGTGGAGACGTGGTAATTTATGCTGATGAGGGGAAAGACTCGCTGCTGGAGTTTCACACCAAGAGCCGGTATAATGCAAAACGTGGTGGAAATGTTGATGCAATGGGCGTTTTGACCTCCCAATTGCACAGTGGATTTGCTGCCCCAACTCTGCGTATTCCCGTTCCTATAGGTACTGTTGTAAAACGTAAAAGAGGAAAATTGTTGGCTGATCTGGTCCATCCAGGTGACGAGATTCTTGTAGCTAGAGGAGGACAAGGAGGGATAAGCTTGATAGATACGCCAGAGAGTAGAAGGAAAAGGTTGATGTCTCTGACCTCCAATGTGATGAGAGATGAAAATGATAAGGTTCTGGTATTTGGTCAACCTGGGGAGGAGGTCAGTTTGGAGTTGATTCTTCGGGTAGTTGCCGATGTCGGTCTGATTGGACTTCCCAATGCTGGAAAATCAACACTTCTTGCAGCCATTACTCTTGCAAAACCCGATATCGCAGACTATCCTTTCACTACTTTAATTCCAAACCTTGGACGCCTTGATGGGGATCCCAGTTTAGGAGCAGGAATGTATCAATCTGAAGCTACTTTAGCAGATTTACCAGGTCTTATAGAAGGTGCTCATTTGGGTAAGGGTCTTGGTCGCAACTTCCTGAGACATCTGAGAAGGACCCGGCTGTTGGTTCATGTTGTTGATGCAGCTGCAGAGAACCCTGTTGATGATTATAGGACTGTGAGAGAAGAATTGCGGATGTACAATCCTAATTACCTTGAAAGACCGTATGTTGTGGTGCTAAATAAGATTGACCTTCCTGAGGCCAGGGATAGGCTTCCATCCATAACTGAAGAAATATTGAGAATTGGAACTGATGATCGTTATCCTGAGCAAATGGGATCCGAAAACAGTGTACAATCATCAGTTCTAGAAGGTGATCTTGCAACTGTTTCTTCTTTGGGAATTCCAGTTGCAGATGAAAAGGATAAAGAGATTGAAGACTATCCCCGTCCTCTTTCTGTTGTAGGCGTTAGTGTTCTGAAAGGTATCAATATAAGTTCAATGTTGGAAGAGATTCGAGCAGCATTGAGGAAGTGCAGAGATTCCGATGGTTCGGCGATATTGAATTCGGGTGGTTAA 2904 44.52 MLFRCLEMSFAWSTALLEFVMLGVPYFKLIQPYPCIKDPSWPTDFGFERIRALNHLSLARPRRRGPIREIELHETSSSSSQRRLPNRAPLFLRRSLNLAFQSVNCFILSGRRVIMDVDPRYYDHIAVNDGDVQNIVLSYLVHNCYKETAESFTTCTGLKQHTDYLVDMEKRKRIYDFAVEGNALKAIELTEEVAHGLLEKNEDLHFDLLSLHFVELVCSRKCTEALEFAQVKLAPFGKLHKYVEKLEDFMALLAYEEPEKSPMFHLLSVDYRQRVAESLNRAILAHGNLPSYTPMERLIKQATVVRQSLSQELGKSSVRLTATRSNQLQNLLPPMVVVWKIGVLSSYALGARVGHKLSHLGLLSLFVSFQFGDLVVLMACLVIVHASWSGFGVEEHGRNSTLLSYAISSNAGFVYQMCQSNIWAQIKCPVTPWAHRWHTSLPVHDSAVDPKVPTPNHFRFSGIMVSILCLPSSSSYVLHDKSFSSSFFPKRRYGNRGFPRYLSYCSITCKLARVVDSSANPATLTKEAHKYFDQAIITVRSGDGGHGTVLSMPNQQTSKSQGKHGKEKDKAKKKSLYKRDFDGSLILPMGGRGGDVVIYADEGKDSLLEFHTKSRYNAKRGGNVDAMGVLTSQLHSGFAAPTLRIPVPIGTVVKRKRGKLLADLVHPGDEILVARGGQGGISLIDTPESRRKRLMSLTSNVMRDENDKVLVFGQPGEEVSLELILRVVADVGLIGLPNAGKSTLLAAITLAKPDIADYPFTTLIPNLGRLDGDPSLGAGMYQSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAENPVDDYRTVREELRMYNPNYLERPYVVVLNKIDLPEARDRLPSITEEILRIGTDDRYPEQMGSENSVQSSVLEGDLATVSSLGIPVADEKDKEIEDYPRPLSVVGVSVLKGINISSMLEEIRAALRKCRDSDGSAILNSGG 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30034653 30045063 - CcPI632755_05g021050.1 Cco05g2105 179733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2105 967 ProSiteProfiles Obg domain profile. 529 728 IPR006169 -
Cco05g2105 967 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 730 951 IPR027417 -
Cco05g2105 967 SMART toby_final6 220 315 IPR013144 -
Cco05g2105 967 ProSitePatterns GTP1/OBG family signature. 789 802 IPR006074 GO:0005525(InterPro)
Cco05g2105 967 SUPERFAMILY Obg GTP-binding protein N-terminal domain 531 693 IPR036726 -
Cco05g2105 967 CDD Obg 729 867 IPR031167 GO:0005525(InterPro)
Cco05g2105 967 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 167 224 IPR006595 -
Cco05g2105 967 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 513 955 IPR045086 GO:0003924(InterPro)|GO:0003924(PANTHER)|GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005739(PANTHER)
Cco05g2105 967 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 729 952 IPR031167 GO:0005525(InterPro)
Cco05g2105 967 Pfam 50S ribosome-binding GTPase 730 857 IPR006073 GO:0005525(InterPro)
Cco05g2105 967 Pfam GTP1/OBG 590 686 IPR006169 -
Cco05g2105 967 ProSiteProfiles LIS1 homology (LisH) motif profile. 128 160 IPR006594 GO:0005515(InterPro)
Cco05g2105 967 Pfam CTLH/CRA C-terminal to LisH motif domain 168 309 IPR024964 -
Cco05g2105 967 MobiDBLite consensus disorder prediction 546 573 - -
Cco05g2105 967 Gene3D GTP1/OBG domain 530 727 IPR036726 -
Cco05g2105 967 SMART ctlh 167 224 IPR006595 -
Cco05g2105 967 PRINTS GTP1/OBG GTP-binding protein family signature 731 751 IPR006073 GO:0005525(InterPro)
Cco05g2105 967 PRINTS GTP1/OBG GTP-binding protein family signature 787 802 IPR006073 GO:0005525(InterPro)
Cco05g2105 967 PRINTS GTP1/OBG GTP-binding protein family signature 804 822 IPR006073 GO:0005525(InterPro)
Cco05g2105 967 PRINTS GTP1/OBG GTP-binding protein family signature 752 770 IPR006073 GO:0005525(InterPro)
Cco05g2105 967 Gene3D - 728 959 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2105 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0696 Cco-Chr5:5726072 Cco05g2105 Cco-Chr5:30034653 1.60E-51 dispersed
Cco05g2105 Cco-Chr5:30034653 Cco05g2940 Cco-Chr5:36858714 1.20E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00466 . Blo17g00770 . Bda08g01253 . . . . . . . . . . . . . . . . . . . . . Cla05g01905 Cam05g2042 Cec05g2050 Cco05g2105 Clacu05g2034 Cmu05g1913 Cre05g2035 . . . Cme04g00509
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31