Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2113 ATGATTTCCCAGTTCTTCGTGCTCTCGCAGAGAGGCGACAACATCGTATTCCGAGATTATCGTGGTGAAGTACCGAAAGGAAGTGCTGAGATCTTTTTCCGAAAAGTGAAATTCTGGAAGGATGACGGAGAAGGAGATGCGCCACCTGTCTTTAATTTGGATGGTGTAAACTATTTTCACGTGAAGGTTGTAGGACTGTTATTTGTTGCTACAACAAGGACTAATGCATCGCCTTCTCTTGTTCTTGAACTTCTTCAAAGAATTGCACGTGTCATCAAAGATTACCTTGGGGTTCTCAATGAAGATTCCCTCAGGAAAAATTTTGTTCTTGTGTATGAGTTGCTGGATGAAGTTATTGATTTTGGTTATGTACAAACAACTTCAACTGAGGTTCTGAAGTCATACGTATTTAATGAGCCAATTGTGGTTGATGCTGCACGCTTGCCTCCCCTTGGTCCGGCTTCCATTTTTGTGCAAGGGAGCAAACGAATGCCAGGTACAGCTGTCACTAAGTCTGTGGTTGCAAATGAGCCTGGAGGTAGAAAAAGAGAGGAAATTTTTGTTGACATAATCGAGAAGATTAGTGTCACATTCAGCTCAAGTGGTTATATACTTACTTCAGAAATTGATGGTACCATTCAAATGAAGAGCTATCTTACGGGTAACCCAGAAATTCGCCTTGCTCTTAATGAGGACTTGAGCATTGGAAGAGGTGGAAGGTCAATCTATGATTATAGCAGTTCATCTGGTGGAGGGACAGTTATCCTTGATGATTGCAATTTTCATGAATCCGTGCATCTTGATAATTTCGACACTGACAGAACTTTGGTCTTGGTACCACCAGAAGGTGAATTTCCTGTCATGAATTATCGAATGACTCAGGAATTCAAGCCTCCGTTCCGAATTAATGCCTTGATTGAAGAAGCAGGGTCACTTAAGGCTGAAGTAATTCTGAAAGTTCGGGCTGAATTTGCCTCCAGCATCACAGCAAACACAATTATGATTCAGATGCCACTGCCAACTTTCACAACAAGAGTCAGTTTTGAGTTGGAACCCGGAGCAGTTGGAAATGCAACTGATTTTAAGGAAGCTAACAAGAGACTTGAATGGGGTTTGAAAAAGATTGTTGGTGGATCTGAACATACTTTGCGTGCAAGGCTCACATTTTCACAAGAATCACATGGAAACATCGTGAAAGAAGCTGGACCCGTTAGTATGACGTTCACAATTCCAATGTACAACGCTTCAAGGCTCCAGGTTAAGTACTTGCAGATTGCAAAGAAGTCTAACACCTATAATCCATATAGGTGGGTAAGATATGTGACGCAAGCAAATTCATATGTCGCTCGGTTGTGA 1356 41.74 MISQFFVLSQRGDNIVFRDYRGEVPKGSAEIFFRKVKFWKDDGEGDAPPVFNLDGVNYFHVKVVGLLFVATTRTNASPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAARLPPLGPASIFVQGSKRMPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGRGGRSIYDYSSSSGGGTVILDDCNFHESVHLDNFDTDRTLVLVPPEGEFPVMNYRMTQEFKPPFRINALIEEAGSLKAEVILKVRAEFASSITANTIMIQMPLPTFTTRVSFELEPGAVGNATDFKEANKRLEWGLKKIVGGSEHTLRARLTFSQESHGNIVKEAGPVSMTFTIPMYNASRLQVKYLQIAKKSNTYNPYRWVRYVTQANSYVARL 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30101684 30106852 + CcPI632755_05g021130.1 Cco05g2113 179741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2113 451 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Cco05g2113 451 PRINTS Clathrin coat assembly protein signature 12 32 IPR001392 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cco05g2113 451 PRINTS Clathrin coat assembly protein signature 101 128 IPR001392 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cco05g2113 451 PRINTS Clathrin coat assembly protein signature 256 283 IPR001392 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cco05g2113 451 PRINTS Clathrin coat assembly protein signature 325 340 IPR001392 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cco05g2113 451 Pfam Adaptor complexes medium subunit family 182 451 IPR028565 -
Cco05g2113 451 Gene3D - 1 141 - -
Cco05g2113 451 FunFam AP-2 complex subunit mu, putative 1 143 - -
Cco05g2113 451 Pfam Clathrin adaptor complex small chain 1 132 IPR022775 -
Cco05g2113 451 Gene3D Mu homology domain, subdomain B 298 450 - -
Cco05g2113 451 PANTHER AP COMPLEX SUBUNIT MU 1 450 IPR050431 GO:0005802(PANTHER)|GO:0006605(PANTHER)|GO:0016192(PANTHER)|GO:0031410(PANTHER)|GO:0090160(PANTHER)
Cco05g2113 451 CDD AP4_Mu_N 3 143 - -
Cco05g2113 451 Gene3D Mu homology domain, subdomain B 182 446 - -
Cco05g2113 451 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 182 450 IPR036168 -
Cco05g2113 451 PIRSF AP_complex_mu 1 451 IPR001392 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cco05g2113 451 ProSiteProfiles Mu homology domain (MHD) profile. 183 450 IPR028565 -
Cco05g2113 451 CDD AP-4_Mu4_Cterm 178 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2113 K12402 - - csv:101220143 858.596
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2113 Cco-Chr5:30101684 Cco05g2830 Cco-Chr5:35966651 1.30E-64 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g994 . . Bda01g00516 Bda03g00270 Bpe02g00373 Bpe04g00224 Bma04g00219 Bma01g02339 . . Cma01g01932 Cma09g00135 Car01g01508 . . Cpe06g00094 . . . . . . . . . . . . . . . . . Cone17ag1358 Cone20ag0122 Lsi04g01700 Csa03g04241 Chy04g00475 . . . . . . . . . . Cmo01g01995 Cmo09g00131 . . . Car09g00121 . Cpe02g00105 . . . . . . . Cla05g01911 Cam05g2048 Cec05g2059 Cco05g2113 Clacu05g2043 Cmu05g1920 Cre05g2043 . . . Cme04g00520
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004347 2 1 2 2 2 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 2 1 2 1 1 42