Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2120 ATGGAAGTTGCACAAATTCTTTGCATGAACAAGGGAGGTGGGGAAACGAGTTACGCTCAAAACTCATCCCTTCAGAGCAAAATCATATCCGACTCAAAGCGAATCACTGAGGAAGCAGTTGAAGCCATCATAAGCACTTCCAATACAACCGGTGCGCCACAAAGCATTACCATAGTGGATTTGGGCTGCTCATCTGGGCCCAACACATTGCTTCTAGTCTCCGACACCCTCAACCTTCTTTACGCTAAATGCAAACGCCTCGGCTACCCGCTGCCCGAAGTCTTGGTTTTCTTGAACGACCTCTTCAGCAACGACTTCAACTACATATTCGGGTCACTCCCCGACTTCCACCGGCGGCTCGTGGCCGAAAACGGTGGCGAGGTTGGGCCTTGTTTTATCTCCGCCGTGCCGGGTTCGTTTTACGGAAGGTTGTTCCCTAAAACCAGCTTGAATTTTGTGCACTCTTCTTCTAGCCTTCATTGGCTGTCGAAGGTCCCAGAAGGCTTGGAAGGGGAAGGGAAAAGGAAGATGAATAAAGGGAAGCTTTATATTTCTTCGACCAGCCCAAGAAGTGTGTTGGAGGGTTACGGTGAACAGTTTAAGAATGATTTTTCGAGGTTCATAAAATCGCGATCTGAAGAAATGGTTAGTGGGGGCCGTATGGTTTTATCTCTCATGGGGAGGAAATCAATGGATCCCACAACTGCAGATAGCTGCCATCACTGGGAGCTCTTAGCTCAGGCTTTAACCACCTTGGCTTCTCAGGGTTTGGTTGAAGAGGAAAAAATCGACTCATTTAATGCACCATATTATGCGCCATGCATGGAAGAAGTGAAGAGAGAGACAGAGAAGGAAGGTTCGTTCATCATAGATCGGTTCGAAGCGTTCGAGGTGGAATGGGATGGGTTCGCCAGCGAGGCTGAGAATGGTCTCAAATTTCTGTCCAGAGGTCAACGAGTGGCAAAGACAATAAGGGCAGTGGTTGAAACCATGTTGGAGTCTCATTTTGGAGGCCATATTATGGATGCTTTGTTTGACCGTTATGGGGCCATTGTTCAACATTACTTGTCCAACCATAGAACTAAGTATACCAATTTGGTCATTTCTTTTGTCAAGAAATGA 1122 47.06 MEVAQILCMNKGGGETSYAQNSSLQSKIISDSKRITEEAVEAIISTSNTTGAPQSITIVDLGCSSGPNTLLLVSDTLNLLYAKCKRLGYPLPEVLVFLNDLFSNDFNYIFGSLPDFHRRLVAENGGEVGPCFISAVPGSFYGRLFPKTSLNFVHSSSSLHWLSKVPEGLEGEGKRKMNKGKLYISSTSPRSVLEGYGEQFKNDFSRFIKSRSEEMVSGGRMVLSLMGRKSMDPTTADSCHHWELLAQALTTLASQGLVEEEKIDSFNAPYYAPCMEEVKRETEKEGSFIIDRFEAFEVEWDGFASEAENGLKFLSRGQRVAKTIRAVVETMLESHFGGHIMDALFDRYGAIVQHYLSNHRTKYTNLVISFVKK 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30182717 30184573 + CcPI632755_05g021200.1 Cco05g2120 179748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2120 373 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 373 IPR029063 -
Cco05g2120 373 Gene3D Vaccinia Virus protein VP39 21 299 IPR029063 -
Cco05g2120 373 Gene3D - 6 359 IPR042086 -
Cco05g2120 373 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 6 370 IPR005299 GO:0008168(InterPro)|GO:0008757(PANTHER)|GO:0032259(PANTHER)
Cco05g2120 373 Pfam SAM dependent carboxyl methyltransferase 46 371 IPR005299 GO:0008168(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2120 K08241 - - csv:101220850 641.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1737 Cco-Chr4:32401128 Cco05g2120 Cco-Chr5:30182717 3.30E-85 dispersed
Cco04g1738 Cco-Chr4:32424916 Cco05g2120 Cco-Chr5:30182717 1.80E-91 dispersed
Cco05g2120 Cco-Chr5:30182717 Cco06g0930 Cco-Chr6:12181656 3.90E-46 dispersed
Cco09g1109 Cco-Chr9:10639685 Cco05g2120 Cco-Chr5:30182717 3.90E-49 transposed
Cco10g0062 Cco-Chr10:628090 Cco05g2120 Cco-Chr5:30182717 1.40E-91 transposed
Cco04g1735 Cco-Chr4:32391140 Cco05g2120 Cco-Chr5:30182717 3.50E-28 wgd
Cco05g2120 Cco-Chr5:30182717 Cco07g0924 Cco-Chr7:21330320 4.20E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g981 . Blo12g00901 . Bda03g00269 . . Bma04g00217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00482 . . . . . . . . . . . . . . . . . . . . . . . . . Cla05g01919 Cam05g2056 Cec05g2068 Cco05g2120 Clacu05g2050 Cmu05g1927 Cre05g2050 . . . Cme04g00536
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218