Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2125 ATGGAGTATCGAGCTTCGTCGACTGTCTACAAGAAATTTTCAAATGCTCGCAGTTTCAACGATAAATCAGCGTACGATGGCGTCTTCGCTGCTCCGTCGAAGCACGGAGCTCCGGTCTTCTCTGCTCGAGTCGAGGACTACAGGGAAATTTTTGGCGGTTCGCGAGTTTCCTCGATTCCGATTCTCGATGTTCCGGCACTAAGCGATAAGAAGTTTCCGGGCGATGTTCGTACTTCGAAGGTTGAATATTCGAAGATTTTTGGTGGCTTTGATGAGTTAAATTTCGCCATACCTTATGAAGAACTTCTGGCGGAGGCAAACAAAAGAAATTCGTTTTCTCAGAAAACTCGGACTTCAGCTGGAAGAGGATCCGCGGCAGCTGAAAATTCTTCTCAGTATGAGAAGGAGAATAACTTTTCCACCCGTGAAGCGTCGTCTGAACCACTTGATAGAACGGAGAAATTCAGCGTGTCATATCAAAAGATCAACCAAGGAAACAAAAGTTTTGCTACGGAGACGACTCATGTAGCTCTTCCCCATGCCATTCCAGGCTTTTCATGTTTAATTGATGAACACACTCCTGTGCAGATGTGTGGAACTGGTATGCCAACGTCTGAAAAATTGAATAATATTTGCCCAGAAAACATTGGGAGTGAAGTGGCAGATAAAGTTGAGCTTCCAATTTCTGGTGATAGTGAACAGGCTTTTAAATCAAGTAATCCGACCAATTCTCAAAACAGAACTGGCTGGTTTAGATCAGATTCAGCTGATAAGTTATTCAATGGGTATGAGGTGGATCAAGGGGTAAAGAACCCCGACACTCCACCAAAATATAATTTATCGCCTAAATTTGGTATAAATGAGGGATTTTCAGGGAGAACAACTGGTTTGAAGTCTGAAGCTTTTGAACATTCTGAAGATCCTTGTGATGGTTCTTCACCACCATACTTTGGTGAGGATGTTGAGGTGAATCCAGTTGCTGCTGCCTCGGTTGCAGCTTTGAGAAAAGCAATTGATGCTGCTCAGGAAAGTATAAAAATTGCTAAGGAGTCAATGGAAAGAAGGAAAACAGCCGGACTTCAAAAACATAAAAAAACAAGGTCTTCTAGGAGCCTAAATTCTGAAGAGAGAAGGGAAGTGAAAACTTCAAATAATTCAGGCATGGGGAAAGAGAAGGTGGCTAGGGAAACCTGTGGAACAGTGGACACTTCAGAGCAAGCAGTTGCTGAAATCAGGGGACAGAATTCATGTACAGAATGTCCTGTCACTCAAAGAGTGGTGAGAGAAAATTTAAATGCCTCAGGAAGAAATTATATGGAATTTAAGACGACAGAAGTTGATTGTAGGGAGGAAGAAGGAGAAGAATTAGATGCAAAAGAACAATTTTATGAACCTAGGTCTTTTGGTGAAAATGAGGCAAAAGAACTGGAATCTGTCATGGAAGACAATGCAGATGGATATGAATGGCAAGGAAACAATGGATTAAAGAAAGCATTTGAGAATCCTGGAGATTGTGGTGATAGCTTGGAAGTGGTCAAAGAGACTAGACCTGAGGAAAGTGGCATAAACTTAAGTGTAGTCAAAGGTATTCTTATGAGCAAATTAAAGTCAGTTCTAGGTGTCGTTGAGCAGGAAGAAGGTAAAATGAAATGTGGGCAAAACCAAAACCAGCTAGAAACTAACTTGAAAGCTGAGGCATCAATGGAACTTGAAAAATGTGTGGAATTTCTGGAAGATCTTAAAGCAACGAAAGATCATGAGGAGTTTGTAATCAAGGAGATGGGAAAAAACAATGATATGGAGACCCAAGTTAAGGCTCATCAATGGGAGGTGGAGGGAGTAAGACGTATCTGCCAACAAGAAGAAAGGGAGATGGAAACAAATACTGTCCAATTTGAAAATAATGTTGAAAAGATATTAGACAAATCTAATGAAGAGGAAAGAAATATAAATTGGACTGAAGAATTCCATGATGGCAAAGATGCTCATGACATGAAAGAAAGTGGCCAATTGAAACTAAGCAAGGAACTAGAACAAAACAAACAGGATGATGAGATGATCGAAGGGCTTTCCTTTCATTTGTATAATCATGAGATTGGACATGTTCCTAGACAAATAAACATTGGTGAATCTGCAGTACACGACGGCATTGTAAAAACAAAGCTAGACAATTTGAATAGTGAGAGTAAAATTGAATTACAAGATGGTTCCTGTGAGCAGGATGAATGTGACAAGCTCTCAGAAGACCCGGAAGCTAGTGATTTTATAGAAAGAATGGAAGGAGTGGAAGTGATCACTGACCAACCTGTATATCCAGACACTGATAATTCAACAGATATAGCAAAGATTTCCTTTGAAGTTGTAAATAATGAATCTGAGACAATTACAGAGGGTGACATGGAGGATAGATTACCTTTTGAATTGTTTTCCATGGCCAAGGATGCACTTAATTGTAGAGAATTTAGAATCAAAATGGAAGATTCACACGCAAGCCCTATTTTCATCCACAATGACATAGATTTTGGTGTGACCGATATGAAACTAGAGCAGAAGCAACATGATACTCCTGCAAACAGGTCGTCAATCTTTTGCAGTTTGGGAAATGCAGAAGGTTTGGCTCCTGAACTTAGAGGAATTGAGAGAAATATAAAGAAAATTGAATTCTCAACAAACAAAGAAAATGATAACAATTCAAATGAAGAAGAGACACTCAGGACTGTAAGTAATATTGAAACAGGCAATGAGCCCGGTACATCTGAAGATGACAAGAAAATCAGTGAAGAAGCAATGGAGGAAACTGTCACGAGCATAATTACTGAAGCAACTAAGGAGAACTATCAAGCAACCATCAAAGTAGAAGAAAGTGAAACTGATTGTGTTTTGAAAAAGGAAACACAGTTGGAATCTGATAAGGACAATAATAGAGTGGGTAGCCAATTTGGCACGATTGAAATAGACTCGGGAATAATTCATATGATCAAAACAAGTCAAGGTTCAAGAGAAAGTGAGGAGAGTTATCAAGAAATCGTGACAGAGGATGAAATGGTAGCTAGTGATTCCTCTGTTGAAGAGGTGGAATATGCAGCTTACTTGGAAAATTTGGAAGAAGTTAATTCGCCTGGAAGTTCTGGAAGAAAAGAAAATTTAGCCGATATAGAACAGGAAACTAGTACTAGCCAGAAGGTTACAGAAAATGAGGATCATCAAACAACCCCAACACTGGATGAAATTGAAATTAATGCTGACATGCAGCAGAGAGAAGCAGGGGCTGAATCCGAACTCAACAGTGAGATAGCAGCTCATGTTTTGTCTCAAGCTAAAGAGGTAGTAGAGGAGTTAGCTGAGAATTTGACGAATCAAAGTATCTTAGAAACTGGGGAGAATCTTCAAGCAACCCATCTAAGGGAGGAGGAGAAGGTATTCCATGAGAAATTCGAGAAAGAAGCTGAAGTAATAAAGGGACGGCAGAGAAAAATTGATGAAGCGAAAGAAAAGGAGAGAGAGAGAGAGAGATTAGCTGTAGAAAGAGCAATTCGGGAGGCTCGTGAAAGGGCATTTGTAGAAGCCCGAGAGAGGGCTGCTGCTGGGAGAGCTTCTTCTGACACTCGTCGAAGAGTAATGGCACGTGAACGCTCAGGGAAGATTTCTGTAGAGGCCAATCATAAGCCTTCTGCTGAGAAGGTTTCAAAGGAAGCCAAATTAAAAGCTGAACGCGCTGCTGTTGAAATGGCTACTGCTGAGGCAAGAGAGCGTGCTTTAGAAAAAGCCATGTCTGAGAAGGCTATTTCTGAGGCAAGAAATCTGGCTGACAAGATTGTAGCCGAAAAATTGCATGGTGCTGCTGGAGATAGCAAAATAAAGAAGAGCTTTTCATTTAGTGACTTTCAGCCAAAAGGCTCATACAACAATTTCAGGCATGCGAATTCATTTAACCTTGGAGGTCCTGACTCTTCTGAGGGAGATGTGGGATCTGGTGGGGAATCAGCTCAGAGATGTAAAGCCAGGTTGGAGAGGCATCAACGAACAGTTGAGCGTGTGGCAAAAGCTCTTGCAGAGAAGAATATTCGTGACATTCTCGCACAGAGAGAACAGGAAGAGAGAAATAGACTAGCAGAAGCTCTAGATGCTGAAGTTAAAAGGTGGTCAAGTGGGAAGGAGGGAAATCTGCGTGCATTGCTTTCAACTCTTCAATATATCCTCGGGCCCGACAGTGGGTGGCAGCCAGTCCCTCTAACAGATATCATCACAACCGCTGCTGTCAAGAAAGCTTACCGTAGAGCAACTCTTTCAGTTCATCCTGACAAATTGCAACAACGGGGTGCGACCATTCAACAAAAATACATATGCGAGAAGGTTTTTGATCTTTTGAAGGCTGCATGGAACAGATTCAACGTGGAGGAACGATAG 4407 41.21 MEYRASSTVYKKFSNARSFNDKSAYDGVFAAPSKHGAPVFSARVEDYREIFGGSRVSSIPILDVPALSDKKFPGDVRTSKVEYSKIFGGFDELNFAIPYEELLAEANKRNSFSQKTRTSAGRGSAAAENSSQYEKENNFSTREASSEPLDRTEKFSVSYQKINQGNKSFATETTHVALPHAIPGFSCLIDEHTPVQMCGTGMPTSEKLNNICPENIGSEVADKVELPISGDSEQAFKSSNPTNSQNRTGWFRSDSADKLFNGYEVDQGVKNPDTPPKYNLSPKFGINEGFSGRTTGLKSEAFEHSEDPCDGSSPPYFGEDVEVNPVAAASVAALRKAIDAAQESIKIAKESMERRKTAGLQKHKKTRSSRSLNSEERREVKTSNNSGMGKEKVARETCGTVDTSEQAVAEIRGQNSCTECPVTQRVVRENLNASGRNYMEFKTTEVDCREEEGEELDAKEQFYEPRSFGENEAKELESVMEDNADGYEWQGNNGLKKAFENPGDCGDSLEVVKETRPEESGINLSVVKGILMSKLKSVLGVVEQEEGKMKCGQNQNQLETNLKAEASMELEKCVEFLEDLKATKDHEEFVIKEMGKNNDMETQVKAHQWEVEGVRRICQQEEREMETNTVQFENNVEKILDKSNEEERNINWTEEFHDGKDAHDMKESGQLKLSKELEQNKQDDEMIEGLSFHLYNHEIGHVPRQINIGESAVHDGIVKTKLDNLNSESKIELQDGSCEQDECDKLSEDPEASDFIERMEGVEVITDQPVYPDTDNSTDIAKISFEVVNNESETITEGDMEDRLPFELFSMAKDALNCREFRIKMEDSHASPIFIHNDIDFGVTDMKLEQKQHDTPANRSSIFCSLGNAEGLAPELRGIERNIKKIEFSTNKENDNNSNEEETLRTVSNIETGNEPGTSEDDKKISEEAMEETVTSIITEATKENYQATIKVEESETDCVLKKETQLESDKDNNRVGSQFGTIEIDSGIIHMIKTSQGSRESEESYQEIVTEDEMVASDSSVEEVEYAAYLENLEEVNSPGSSGRKENLADIEQETSTSQKVTENEDHQTTPTLDEIEINADMQQREAGAESELNSEIAAHVLSQAKEVVEELAENLTNQSILETGENLQATHLREEEKVFHEKFEKEAEVIKGRQRKIDEAKEKERERERLAVERAIREARERAFVEARERAAAGRASSDTRRRVMARERSGKISVEANHKPSAEKVSKEAKLKAERAAVEMATAEARERALEKAMSEKAISEARNLADKIVAEKLHGAAGDSKIKKSFSFSDFQPKGSYNNFRHANSFNLGGPDSSEGDVGSGGESAQRCKARLERHQRTVERVAKALAEKNIRDILAQREQEERNRLAEALDAEVKRWSSGKEGNLRALLSTLQYILGPDSGWQPVPLTDIITTAAVKKAYRRATLSVHPDKLQQRGATIQQKYICEKVFDLLKAAWNRFNVEER 1468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30216994 30222946 - CcPI632755_05g021250.1 Cco05g2125 179753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2125 1468 MobiDBLite consensus disorder prediction 890 925 - -
Cco05g2125 1468 Coils Coil 1100 1120 - -
Cco05g2125 1468 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 846 1468 - GO:0005737(PANTHER)|GO:0030276(PANTHER)|GO:0031982(PANTHER)|GO:0043231(PANTHER)|GO:0072318(PANTHER)|GO:0072583(PANTHER)
Cco05g2125 1468 MobiDBLite consensus disorder prediction 232 251 - -
Cco05g2125 1468 MobiDBLite consensus disorder prediction 110 152 - -
Cco05g2125 1468 SUPERFAMILY Chaperone J-domain 1329 1464 IPR036869 -
Cco05g2125 1468 MobiDBLite consensus disorder prediction 901 915 - -
Cco05g2125 1468 Coils Coil 1155 1184 - -
Cco05g2125 1468 MobiDBLite consensus disorder prediction 368 385 - -
Cco05g2125 1468 FunFam Auxilin-related protein 1 1339 1468 - -
Cco05g2125 1468 Coils Coil 1329 1380 - -
Cco05g2125 1468 MobiDBLite consensus disorder prediction 1056 1076 - -
Cco05g2125 1468 Coils Coil 1229 1256 - -
Cco05g2125 1468 Gene3D DnaJ domain 1342 1468 IPR036869 -
Cco05g2125 1468 MobiDBLite consensus disorder prediction 350 398 - -
Cco05g2125 1468 Coils Coil 331 351 - -
Cco05g2125 1468 MobiDBLite consensus disorder prediction 1194 1213 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2125 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0277 Cco-Chr4:8195764 Cco05g2125 Cco-Chr5:30216994 6.80E-53 transposed
Cco05g2173 Cco-Chr5:30551550 Cco05g2125 Cco-Chr5:30216994 6.40E-30 transposed
Cco08g0735 Cco-Chr8:18953585 Cco05g2125 Cco-Chr5:30216994 1.40E-44 transposed
Cco04g1727 Cco-Chr4:32342844 Cco05g2125 Cco-Chr5:30216994 1.40E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g969 Blo01g01570 . . . . . . Bma01g02328 . . Cma01g01918 . Car01g01499 . . . . . . . . . . . . . . . . . . Cone4ag1922 Cone7ag1834 . . Lsi04g01688 Csa03g04228 Chy04g00487 . . . . . . . . . . Cmo01g01981 . . . . . . Cpe02g00118 . . . . . . . Cla05g01924 Cam05g2061 Cec05g2074 Cco05g2125 Clacu05g2055 Cmu05g1932 Cre05g2055 . . . Cme04g00546
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008012 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 8 1 0 35