Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2127 AAATTGAATATTGGTGTCACGATGCCTCTGCGAGGCATAATTCGTGAGAAGAGTGAAATACGAGAAGGCAGTGGGAATTCATCGAAGAAAATGAGGGAGGGAGTTCAAATGCGTCATCCTGGGAAGTCGCATATTGTCCCGGAACAGCCTTCTTCATCTTCTCGGGTTCCGATTGAACAGAGCCGTTGGGCGAATTTGCCTCCGGAGCTTCTTTTGGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCCTCTCGCCGGGATGTTGTTACCTGTGCTTCAGTTTGCAGGTCATGGCGGATGGTTACAAAGGAAGTCGTTAGGACTCCCGAACAGTGTGGGTGGATTACGTTCCCAATCTCTCTGAAACAGCCGGGACCAAGAGACACTCCGATCCAATGCTTCATTAAGAGAGAAAGGGCTACTTCAACGTTTCGACTCTATCTCGGGTTAAGCCCTGCCCTGTCGGGTAATCTAAGTAAACTGTTGCTAACTGCAAAAAGAATCCGACGAGCAATGAGTACAGATTTCATTGTATCATTAGTTCCAGACGACTTCTCTCGAGCAAGCAACAATTATATAGGAAAGTTGAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTACGACAGTCAGCCTCCTTATGCCCCAGAATTGCAAACCAGTAGATCGAAAAGAAAAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAATGAACTACAAAGTCGCCGCTGTAGCTTACGAGCTCAACGTCCTCCGCACCAGGGGGCCGAGAAGAATGAGGTGCACCATGCATTCAATACCTATTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTCAAAGACTGTATTAATGAGCATCATTCATCTACGTTGATTTCCAAAGGAAAGAAGCCGATAACCGGGTCCCCCGAGCCTCAGGAACCGATATCTCCATTGGTACTGAAGAACAAAGCTCCGAGATGGCACGAACAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACAGTTGCCTCGGTGAAGAACTTCCAGCTGGTTGCTGCTGCGGAGACGAGTCAAAATGTATCTGCAGCAGAACAAGAGAGAGTGATCTTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACCAAGCCAGCCTGTGAATGA 1242 47.1 KLNIGVTMPLRGIIREKSEIREGSGNSSKKMREGVQMRHPGKSHIVPEQPSSSSRVPIEQSRWANLPPELLLDIIQRVEASETSWPSRRDVVTCASVCRSWRMVTKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTDFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPYAPELQTSRSKRKIHLKQVSPSKTPMNYKVAAVAYELNVLRTRGPRRMRCTMHSIPIAAVEEGGTAPTPTEFKDCINEHHSSTLISKGKKPITGSPEPQEPISPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30253926 30256331 + CcPI632755_05g021270.1 Cco05g2127 179755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2127 413 Gene3D Tubby Protein; Chain A 121 413 IPR025659 -
Cco05g2127 413 SUPERFAMILY Tubby C-terminal domain-like 112 413 IPR025659 -
Cco05g2127 413 Gene3D - 57 111 - -
Cco05g2127 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Cco05g2127 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Cco05g2127 413 Pfam Tub family 124 408 IPR000007 -
Cco05g2127 413 CDD F-box_AtTLP-like 63 107 - -
Cco05g2127 413 PANTHER TUBBY-RELATED 28 412 - -
Cco05g2127 413 SUPERFAMILY F-box domain 52 106 IPR036047 GO:0005515(InterPro)
Cco05g2127 413 MobiDBLite consensus disorder prediction 17 56 - -
Cco05g2127 413 PRINTS Tubby superfamily signature 243 270 IPR000007 -
Cco05g2127 413 PRINTS Tubby superfamily signature 179 195 IPR000007 -
Cco05g2127 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Cco05g2127 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Cco05g2127 413 PRINTS Tubby superfamily signature 195 219 IPR000007 -
Cco05g2127 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Cco05g2127 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Cco05g2127 413 Pfam F-box-like 63 105 IPR001810 GO:0005515(InterPro)
Cco05g2127 413 MobiDBLite consensus disorder prediction 17 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2127 Cco-Chr5:30253926 Cco08g0447 Cco-Chr8:10908332 8.00E-117 dispersed
Cco05g1156 Cco-Chr5:10642680 Cco05g2127 Cco-Chr5:30253926 1.20E-118 transposed
Cco08g0837 Cco-Chr8:20209781 Cco05g2127 Cco-Chr5:30253926 3.60E-119 transposed
Cco09g0331 Cco-Chr9:2926805 Cco05g2127 Cco-Chr5:30253926 4.10E-12 transposed
Cco04g1720 Cco-Chr4:32309656 Cco05g2127 Cco-Chr5:30253926 3.80E-122 wgd
Cco05g2127 Cco-Chr5:30253926 Cco07g0911 Cco-Chr7:21060072 4.60E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59347 PF01167 Tub 1.50E-105 CL0395 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2127 K19600 - csv:101222500 747.273