Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2127 | AAATTGAATATTGGTGTCACGATGCCTCTGCGAGGCATAATTCGTGAGAAGAGTGAAATACGAGAAGGCAGTGGGAATTCATCGAAGAAAATGAGGGAGGGAGTTCAAATGCGTCATCCTGGGAAGTCGCATATTGTCCCGGAACAGCCTTCTTCATCTTCTCGGGTTCCGATTGAACAGAGCCGTTGGGCGAATTTGCCTCCGGAGCTTCTTTTGGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCCTCTCGCCGGGATGTTGTTACCTGTGCTTCAGTTTGCAGGTCATGGCGGATGGTTACAAAGGAAGTCGTTAGGACTCCCGAACAGTGTGGGTGGATTACGTTCCCAATCTCTCTGAAACAGCCGGGACCAAGAGACACTCCGATCCAATGCTTCATTAAGAGAGAAAGGGCTACTTCAACGTTTCGACTCTATCTCGGGTTAAGCCCTGCCCTGTCGGGTAATCTAAGTAAACTGTTGCTAACTGCAAAAAGAATCCGACGAGCAATGAGTACAGATTTCATTGTATCATTAGTTCCAGACGACTTCTCTCGAGCAAGCAACAATTATATAGGAAAGTTGAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTACGACAGTCAGCCTCCTTATGCCCCAGAATTGCAAACCAGTAGATCGAAAAGAAAAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAATGAACTACAAAGTCGCCGCTGTAGCTTACGAGCTCAACGTCCTCCGCACCAGGGGGCCGAGAAGAATGAGGTGCACCATGCATTCAATACCTATTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTCAAAGACTGTATTAATGAGCATCATTCATCTACGTTGATTTCCAAAGGAAAGAAGCCGATAACCGGGTCCCCCGAGCCTCAGGAACCGATATCTCCATTGGTACTGAAGAACAAAGCTCCGAGATGGCACGAACAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACAGTTGCCTCGGTGAAGAACTTCCAGCTGGTTGCTGCTGCGGAGACGAGTCAAAATGTATCTGCAGCAGAACAAGAGAGAGTGATCTTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACCAAGCCAGCCTGTGAATGA | 1242 | 47.1 | KLNIGVTMPLRGIIREKSEIREGSGNSSKKMREGVQMRHPGKSHIVPEQPSSSSRVPIEQSRWANLPPELLLDIIQRVEASETSWPSRRDVVTCASVCRSWRMVTKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTDFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPYAPELQTSRSKRKIHLKQVSPSKTPMNYKVAAVAYELNVLRTRGPRRMRCTMHSIPIAAVEEGGTAPTPTEFKDCINEHHSSTLISKGKKPITGSPEPQEPISPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 30253926 | 30256331 | + | CcPI632755_05g021270.1 | Cco05g2127 | 179755 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2127 | 413 | Gene3D | Tubby Protein; Chain A | 121 | 413 | IPR025659 | - | |
Cco05g2127 | 413 | SUPERFAMILY | Tubby C-terminal domain-like | 112 | 413 | IPR025659 | - | |
Cco05g2127 | 413 | Gene3D | - | 57 | 111 | - | - | |
Cco05g2127 | 413 | ProSitePatterns | Tub family signature 1. | 341 | 354 | IPR018066 | - | |
Cco05g2127 | 413 | ProSitePatterns | Tub family signature 2. | 398 | 413 | IPR018066 | - | |
Cco05g2127 | 413 | Pfam | Tub family | 124 | 408 | IPR000007 | - | |
Cco05g2127 | 413 | CDD | F-box_AtTLP-like | 63 | 107 | - | - | |
Cco05g2127 | 413 | PANTHER | TUBBY-RELATED | 28 | 412 | - | - | |
Cco05g2127 | 413 | SUPERFAMILY | F-box domain | 52 | 106 | IPR036047 | GO:0005515(InterPro) | |
Cco05g2127 | 413 | MobiDBLite | consensus disorder prediction | 17 | 56 | - | - | |
Cco05g2127 | 413 | PRINTS | Tubby superfamily signature | 243 | 270 | IPR000007 | - | |
Cco05g2127 | 413 | PRINTS | Tubby superfamily signature | 179 | 195 | IPR000007 | - | |
Cco05g2127 | 413 | PRINTS | Tubby superfamily signature | 341 | 357 | IPR000007 | - | |
Cco05g2127 | 413 | PRINTS | Tubby superfamily signature | 391 | 413 | IPR000007 | - | |
Cco05g2127 | 413 | PRINTS | Tubby superfamily signature | 195 | 219 | IPR000007 | - | |
Cco05g2127 | 413 | PRINTS | Tubby superfamily signature | 323 | 340 | IPR000007 | - | |
Cco05g2127 | 413 | PRINTS | Tubby superfamily signature | 370 | 389 | IPR000007 | - | |
Cco05g2127 | 413 | Pfam | F-box-like | 63 | 105 | IPR001810 | GO:0005515(InterPro) | |
Cco05g2127 | 413 | MobiDBLite | consensus disorder prediction | 17 | 39 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2127 | Cco-Chr5:30253926 | Cco08g0447 | Cco-Chr8:10908332 | 8.00E-117 | dispersed | |
Cco05g1156 | Cco-Chr5:10642680 | Cco05g2127 | Cco-Chr5:30253926 | 1.20E-118 | transposed | |
Cco08g0837 | Cco-Chr8:20209781 | Cco05g2127 | Cco-Chr5:30253926 | 3.60E-119 | transposed | |
Cco09g0331 | Cco-Chr9:2926805 | Cco05g2127 | Cco-Chr5:30253926 | 4.10E-12 | transposed | |
Cco04g1720 | Cco-Chr4:32309656 | Cco05g2127 | Cco-Chr5:30253926 | 3.80E-122 | wgd | |
Cco05g2127 | Cco-Chr5:30253926 | Cco07g0911 | Cco-Chr7:21060072 | 4.60E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59347 | PF01167 | Tub | 1.50E-105 | CL0395 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2127 | K19600 | - | csv:101222500 | 747.273 |