Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2156 ATGCCGTTGATTCCTCACAGCGTTATCGGTTCTATCTGGAAAAAGCCTCTACGTAAATCTTGTTTCTATGGGAGGAGATTTTTGGATTCGGATTTTGAACTCCAGGATTTTTGTGAAGTGTGCGGAAATTTCTTGAACCCTTCATTTGAGATTCTGCATTCTGTTTACATATGGGAGCAGATTAAAGTCTGTTTAAATATCTGTGAGAAGACGTGCGAAGGTCAAAATGCCTTAATAAAAAAAGTTTCGTTTTGGAGTGCTCGGGGGAGGGGATGGTACGGTGTTGTTTTATCCGGCTCTCCTCCCCCATTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTAGTTCTTTCTATATTTTGCTCCGTTTTTGCTCGGTTCACCATTAGAACAACATTACATACAAATCAAGAGCAAAAAAGAACGGGATATGCGTGCAGCGAAACCCGAATCGATGGTGAGATATCAACCTCAAGAATTCTCAAGTTTCTTTTTATGAATGTTCATGGAGTAGGAATTGAAGCATCAAAGTTTTGGGTGGTTTCATTGGTTGTTCAAGAGTCCGACACGTGGCGTGTCCTTGACCGTTGGTTCATTCCACTTTTTGCTTTCCGAGCGTGCACCGGCGGTGGCGATAGCAAGAAGAATATCCAGCACTTGTTCCACAATGTATGGCGAAACAGAGAAATAGCGGTGACGACCACTGACACTGACCTAAAAGAATCTGGCTTAAGGCCAGGAAGAAGCGTGGAAGACGAGCTTGATTCCAATTCTGCACTATTGACTTGTTTAAACCCTAATTATTTGGAATCTGCTGGCCATTTTTTACTCCGGCTCCATCTTCCAGCAACTCTAATGTTTGGTCGGTGGTCTACTTCTCATCACGAGGAAGAGAACAATCCAGAGCAGATCACATCGAAGGTCAATGAGCTAAAGGCTAAGTTAGGATCCTTAGTTGGACGCAATGCAATATATTGCAGTGATGCATGCTTGAAAAGATATCTAGTGGCCAGGAATTGGAATGTAGACAAAGCAAAGAAAATGCTGGAAGAGACATTCAAATGGAGATCTATGTATAAGCCTGAGGAAATTCGTTGGCCCGAAATAGCACTTGAAAGTGAGACTGGAAAACTTTATCGAGCAAGTTTTCACGACCGAGAAGGAAGAAGTGTTCTTATAATGAAGCCAGGAAAGCAGAACACGGCATCGATAGAAAATCAGATCCGGCATTTGGTATATCTTATGGAGAATGCTCTTCTCAACCTTCCTGAAGGTCAGGAGCAGATGTCATGGCTAATTGATTTTAATGGTTGGTCTCTTAGCACCAGCGTCCCAATCAAATCTGCACGGGAGACCGTCAACATCTTGCAGAACCACTACCCCGAGAGACTAGCCCTTGCGTTTCTATATAATCCCCCAAGGATATTTGAAACGTTCTGGAAGGTAGTCAAGTACCTTTTAGATCCCAAAACATTTCAGAAAGTGAGATTTGTTTATCCTAAGAAGCAAGAGAGTGTGGAACTCATGAAGTCATATTTTGATGAGGAGAATCTTCCGTCAGAGTTTGGAGGAAAAGCCCAACTGGAATATGTCCATGAGGAGTACTCTAGGTTAATGATTCAAGATGATATTAAATGTGCTGCCTTCTGGGAACATGGTGAAAAGCAACACCATATTGTCAATGGCTACTCCAGTGCAGTGGTGGCTCCAGAGTGA 1719 42.76 MPLIPHSVIGSIWKKPLRKSCFYGRRFLDSDFELQDFCEVCGNFLNPSFEILHSVYIWEQIKVCLNICEKTCEGQNALIKKVSFWSARGRGWYGVVLSGSPPPFILSLSLSLSLSLVLSIFCSVFARFTIRTTLHTNQEQKRTGYACSETRIDGEISTSRILKFLFMNVHGVGIEASKFWVVSLVVQESDTWRVLDRWFIPLFAFRACTGGGDSKKNIQHLFHNVWRNREIAVTTTDTDLKESGLRPGRSVEDELDSNSALLTCLNPNYLESAGHFLLRLHLPATLMFGRWSTSHHEEENNPEQITSKVNELKAKLGSLVGRNAIYCSDACLKRYLVARNWNVDKAKKMLEETFKWRSMYKPEEIRWPEIALESETGKLYRASFHDREGRSVLIMKPGKQNTASIENQIRHLVYLMENALLNLPEGQEQMSWLIDFNGWSLSTSVPIKSARETVNILQNHYPERLALAFLYNPPRIFETFWKVVKYLLDPKTFQKVRFVYPKKQESVELMKSYFDEENLPSEFGGKAQLEYVHEEYSRLMIQDDIKCAAFWEHGEKQHHIVNGYSSAVVAPE 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30420830 30426961 - CcPI632755_05g021560.1 Cco05g2156 179784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2156 572 PANTHER GH16843P 293 556 IPR052578 GO:0008526(PANTHER)
Cco05g2156 572 SUPERFAMILY CRAL/TRIO N-terminal domain 296 369 IPR036273 -
Cco05g2156 572 SMART CRAL_TRIO_N_2 328 353 IPR011074 -
Cco05g2156 572 FunFam Phosphatidylinositol transfer protein 3 289 560 - -
Cco05g2156 572 Gene3D - 289 560 IPR036865 -
Cco05g2156 572 CDD SEC14 385 526 IPR001251 -
Cco05g2156 572 SMART sec14_4 373 528 IPR001251 -
Cco05g2156 572 Pfam CRAL/TRIO, N-terminal domain 328 352 IPR011074 -
Cco05g2156 572 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 367 531 IPR001251 -
Cco05g2156 572 Pfam CRAL/TRIO domain 376 525 IPR001251 -
Cco05g2156 572 SUPERFAMILY CRAL/TRIO domain 367 542 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2156 K26544 - - csv:101203752 565.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0647 Cco-Chr4:20802226 Cco05g2156 Cco-Chr5:30420830 3.10E-71 transposed
Cco07g0991 Cco-Chr7:22828407 Cco05g2156 Cco-Chr5:30420830 1.10E-107 transposed
Cco11g1586 Cco-Chr11:28742796 Cco05g2156 Cco-Chr5:30420830 1.40E-69 transposed
Cco04g1707 Cco-Chr4:32226868 Cco05g2156 Cco-Chr5:30420830 3.00E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g936 . . . . . . . . . . Cma01g01905 . Car01g01486 . . . . . . . . . . . . . . . . . . . . Cone17ag1336 . Lsi04g01657 Csa03g04202 Chy04g00516 . . . . . . . . . . Cmo01g01968 . . . . . . Cpe02g00131 . . . . . . . Cla05g01946 Cam05g2089 Cec05g2102 Cco05g2156 Clacu05g2084 Cmu05g1960 Cre05g2079 . . . Cme04g00574
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82