Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2162 ATGAGTACAAGAGATAGGGAACGAGATCTAGAGCTTTTGATCCCAGTCGCTACAGTTTCTGAAAATGGAGCTTCCAAATCTTCCTCCGTCCCCGTTGCCGCTTTATCCAATCATCACTCCGGCCGTGAGGCATTTGCTAAAGTCATTCGCAGCTGGGCGTCCAAGAAGTTCATGACAGGATGTGTAATTCTTCTACCAATTGCTATTACATTCTACATCACATGGGGCTTCATTCGTTTTGTTGATGGTTTCTTCTCACCAATATATAATCACCTAGGGATCAATATTTTTGGGCTTGGGTTTATTACCTCCATCACATTCATCTTTCTTGTTGGGATTTTCATGTCATCTTGGTTGGGAGCTTCTGTTCTTACTCTTGGTGAATGGTTCATTAAGAAAATGCCACTTGTAAGCTATATTTACACGGCCTCAAAGCAAATTAGTACTGCAATATCACCAGATCAAACTTCAAATGCCTTCAAGGAAGTGGCAATTATCAGGCATCCCCGTGCTGGGGAGTATGCTTTTGGATTCATCACTTCCTCCGTTGTTCTTCAGAGCAGAATGGAAGAGGAAGAACTCTATTGTGTTTATGTCCCTACTAATCATCTCTATCTTGGAGACATATTTCTTATGAGTTCCAAGGACATCCTGAGGCCTAATCTGTCTGTCCGAGAGGGAATTGAAATTGTGATCTCTGGAGGGATGTCCGTGCCTCAAATACTGACCACAGTGGACGCAAGAGAAACTCCAACAAGTGGAATCGAAAAACTTTGCAAAACCAAAAGTATGGCCTGTCATCCATCTTCAGTAAGCTGTAACGGAAACAACCAGCAAATTGGAAAATTAGCTCAAATTCTTTAG 864 42.13 MSTRDRERDLELLIPVATVSENGASKSSSVPVAALSNHHSGREAFAKVIRSWASKKFMTGCVILLPIAITFYITWGFIRFVDGFFSPIYNHLGINIFGLGFITSITFIFLVGIFMSSWLGASVLTLGEWFIKKMPLVSYIYTASKQISTAISPDQTSNAFKEVAIIRHPRAGEYAFGFITSSVVLQSRMEEEELYCVYVPTNHLYLGDIFLMSSKDILRPNLSVREGIEIVISGGMSVPQILTTVDARETPTSGIEKLCKTKSMACHPSSVSCNGNNQQIGKLAQIL 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30451218 30453436 + CcPI632755_05g021620.1 Cco05g2162 179790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2162 287 Pfam Protein of unknown function (DUF502) 103 203 IPR007462 -
Cco05g2162 287 PANTHER COV-LIKE PROTEIN 1 8 248 IPR007462 GO:0005794(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2162 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2162 Cco-Chr5:30451218 Cco06g0968 Cco-Chr6:13002109 5.80E-98 dispersed
Cco05g2162 Cco-Chr5:30451218 Cco11g0262 Cco-Chr11:2557245 2.70E-103 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g933 . . . . . . . . . . Cma01g01901 Cma09g00162 Car01g01483 . . Cpe06g00116 . . . . . . . . . . . . . . . Cone4ag1906 Cone7ag1821 . . Lsi04g01653 Csa03g04198 Chy04g00520 . . . . . . . . . . Cmo01g01964 Cmo09g00160 . . . Car09g00143 . Cpe02g00134 . . . . . . . Cla05g01951 Cam05g2097 Cec05g2106 Cco05g2162 Clacu05g2089 Cmu05g1965 Cre05g2083 . . . Cme04g00583
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000845 2 4 2 1 2 2 6 2 3 3 2 3 5 3 3 6 2 3 5 3 3 2 3 2 3 2 3 3 4 2 89