Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g2169 | ATGTATATTCTAGTGGTTTTGGGTCTTCTTTTTGTCGGAATTGTCTTCAAATTTCTGTACTCCAATTTATGGGTTCCACGGAAAATTCAAATCCACTTCCAAAAACAGGGCATAACAGGGCCTTCTTATCGTCCGATCATCAATAACGCCACCGATATCCGTCGTCTGTACAAGGAGGTGAATGCGAAGCCAATTCCGCTGACCCACGATATAGTGTGTCGGTTGCCTTATATTCACCGATGGTCTGAGGAGTACGGGAAGATGTTTGTGTATTGGTTCGGGTCAAAACCGAGGTTGGCAATATTCGACCCAGAAATGATTAAGGAGGTGCTTAGCAATACGGGTGGGCCTTTTAGAAAGGTCGGGTTCACCCCGGTTTCCAAGTTGCTGTTTGGAGAAGGACTTGTGGGACTCGAGGGCGAACAACGGGTCGTCCACCGGAGAATCGCAAATCAAGCTTTCACTATCGACCGTGTGAAGAATCTCGTAGCATTGTTGGCGCCCTTCAGTACCTCACTCTCACCAGACCTGACATCCGCGTTGAGTGTTTGTAATGTATTGGAGAAATGGGAAGAGATGAAGGGAGGAAGGGAGGAGTTTGAATTAGATGTCCATAAACAACTTCGTCTCCTCACAGCAAATGTAATTTCAAGAACTGCTTTTGGAAGTAATTTTGAAGAAGGCAAACGCATTTTCAATTTGCAAGAACAACAAATGCATCATTTTCTCCAGGCCGTCTCAAGTGTTTATATTCCAGGCTACAGATTTTTGCCTACCAAGGGGAATAGAGAGAGGGAGAGGCTGGAAAAAGAAACTCGTGCATCAATAAAAGCACTAGTCGAAAGTGAGAAAAATAGCAAAGAAATGGAAAACTCAACAAATCTACTCAGCCTCTTACTGTCATCTTACAAGAACCAAAATGGGGAAATAGAAAAACTTGGAGTAGAGGAAGTTGTAAATGAATGCAAGACATTCTACTTTGCAGGGATGGAAACAACTGCCAATCTTTTAACTTGGGCCCTTTTACTACTAGCACAGCATCAAGAATGGCAAGATCGAGCTCGACAAGAAGTCATCAATGTTTGCGGCCATAAGTCACCGGCCGCGGCCGATAATCTAACTGAACTTAAACTAGTGGGTATGATAGTCAATGAAACACTTCGACTTTATCCTCCTGTAGTGATGATGATGCGACGGACAACAAAACGGTTGACACTAGGAAAGGTCGACGTGCCAGAAGGCACACAACTTCAACTTTCCATTGCTGCAATCCACCATGACACAGAGCTTTGGGGAGAAGATGCGAGCAGCTTCAACCCTATGAGATTTAGTGAGCCTAGGAAGCATCTAGCTTCATTTTTACCATTTGGATTGGGTCCAAGAATCTGTGTAGGGCAACATTTGGCTTTGATTGAGGTCAAAGTTGCATTGGCTATGATAATTCAGCGATTCTCTTTTACGATTTCCCCAACCTACACGCATGCCCCTATGATGTTTGTAAGCTTAAACCCTCAATTTGGTGTTCAGCTCCTCGTTAGAAGCTTATGGAACTGA | 1554 | 43.95 | MYILVVLGLLFVGIVFKFLYSNLWVPRKIQIHFQKQGITGPSYRPIINNATDIRRLYKEVNAKPIPLTHDIVCRLPYIHRWSEEYGKMFVYWFGSKPRLAIFDPEMIKEVLSNTGGPFRKVGFTPVSKLLFGEGLVGLEGEQRVVHRRIANQAFTIDRVKNLVALLAPFSTSLSPDLTSALSVCNVLEKWEEMKGGREEFELDVHKQLRLLTANVISRTAFGSNFEEGKRIFNLQEQQMHHFLQAVSSVYIPGYRFLPTKGNRERERLEKETRASIKALVESEKNSKEMENSTNLLSLLLSSYKNQNGEIEKLGVEEVVNECKTFYFAGMETTANLLTWALLLLAQHQEWQDRARQEVINVCGHKSPAAADNLTELKLVGMIVNETLRLYPPVVMMMRRTTKRLTLGKVDVPEGTQLQLSIAAIHHDTELWGEDASSFNPMRFSEPRKHLASFLPFGLGPRICVGQHLALIEVKVALAMIIQRFSFTISPTYTHAPMMFVSLNPQFGVQLLVRSLWN | 517 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 30525184 | 30527275 | + | CcPI632755_05g021690.1 | Cco05g2169 | 179797 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g2169 | 517 | Gene3D | Cytochrome P450 | 28 | 511 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2169 | 517 | PRINTS | E-class P450 group I signature | 463 | 486 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2169 | 517 | PRINTS | E-class P450 group I signature | 453 | 463 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2169 | 517 | PRINTS | E-class P450 group I signature | 337 | 363 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2169 | 517 | PRINTS | E-class P450 group I signature | 317 | 334 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2169 | 517 | PRINTS | E-class P450 group I signature | 211 | 229 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2169 | 517 | PRINTS | E-class P450 group I signature | 82 | 101 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2169 | 517 | SUPERFAMILY | Cytochrome P450 | 37 | 513 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2169 | 517 | PRINTS | P450 superfamily signature | 454 | 463 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2169 | 517 | PRINTS | P450 superfamily signature | 381 | 392 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2169 | 517 | PRINTS | P450 superfamily signature | 463 | 474 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2169 | 517 | PRINTS | P450 superfamily signature | 328 | 345 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2169 | 517 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 15 | 508 | IPR050665 | GO:0004497(PANTHER) | |
| Cco05g2169 | 517 | Pfam | Cytochrome P450 | 78 | 492 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2169 | 517 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 456 | 465 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g2169 | Cco-Chr5:30525184 | Cco06g1249 | Cco-Chr6:22529785 | 1.60E-106 | dispersed | |
| Cco05g2168 | Cco-Chr5:30519172 | Cco05g2169 | Cco-Chr5:30525184 | 1.50E-66 | tandem | |
| Cco05g2169 | Cco-Chr5:30525184 | Cco05g2170 | Cco-Chr5:30534743 | 2.40E-275 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g2169 | - | - | - | 0.0 |