Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2172 ATGCCATCTTATATGTCAAAACTACGAGCGCCAGTTAAATTTCTAGGGTGGGAAGGTGGATTGAAAAGTTCATTGGAGCTGCTTTTGGGGCATCAGAAACTGTTGTGTGGCAATTCTAGTCTATTTCACTCTGTTCCTTATTCCTCACTTACAGAATTGCATGCTCTCTTAAGACCTGGCACAATTTCTGGTGCTAGTTCAGAACTAGTTAATCGCCGAAGGAATATCTCGGTTCTTGGGGCAATTTCTCGCACATTTTCTATTCCCTCAGTGTCAAGCCCCGCATTTCAGACTTGTGGGTATCATATTGATTGTGCCATTGCTGAAGCCTATCAATATTCAACTCACAGCAACTGTCAAGATAAACCAATGGCTGCTTGTGGTTCTAGAGCTACACTTGGTGAATGTTCTTTTGATAAATTAAGTTTTAGGAATGCTGCGCACTTGTCTCCTTCAGCGATCAGTGCTGGTATTTGTTTTAACAGTAGAAGCGTCGATAGCTGTCGGAAAGCCAGCATGAGTTTGAAAAATCAAGAGCAGCCTAGCAACAATGTGATATATGGATACTTCACTTACAACATTGCAAAAAGGTTTTGCAGTAGTTACCTACATACTGTGTCAGGAGTAAGAGATCTTCATAGTTCATCAACTTCTCAGTCTGCTGCCGGTTCTGCCCCCAATGTGTCATTTGATAATTCTGCACGGGAGGAACAACTAGCCAACTCTACTGATTCATCTGAACAGAAGATCTCGATGGGCAAATCATTAAAACTGGTTTCTGGATCATGCTATCTACCCCATCCTGATAAAGAAGATACTGGCGGAGAGGACGCTCACTTTATCTGTGTAGATGAACAAGCTATAGGGGTGGCTGATGGTGTGGGTGGTTGGGCAGATCTTGGTGTTGATGCTGGACAGTATTCCCGGGAACTCATGTCGAATTCGGTTAGTGCAGTTCAAGAAGAGCCCAAGGGCTCAATTGATCCAGCTAGAGTCTTGGAGAAGGCTCACTCGAAAACAAAAGCCAAAGGTTCCTCCACTGCTTGTATCATAGCGCTTACAGAACAAGGTCTCCATGCAATCAATTTAGGAGACAGTGGATTTATGGTGGTTAGAGACGGATGCACTATCTTCAGATCTCCTGTGCAGCAGCATGATTTTAACTTCACATTTCAATTGGAGAGTGGAAACAATGGAGATTTGCCTAGCTCTGGACAGGTTTTCTCAGTCCCTGTTGCTCCTGGAGATGTCATAATTGCTGGCACCGATGGTCTCTTTGATAACTTGTACAACAATGAGATCACCGCAGTGGTGGTTCATGCCATGAGAGCAGGCTTAGGTGCTCAGGTGACTGCCCAGAAGATAGCTGCTCTTGCACGCCAACGAGCTCAAGATAAAGACCGACAAACGCCTTTCTCCACTGCTGCTCAAGATGCTGGATTTCGCTATTACGGAGGCAAGCTTGATGACATCACTGTCGTTGTGTCATATGTCACGAGCTCTAATGATAACAAACCCCCAATCTTCAATTCCAGGAAGATTTTCCCATTTTCCAATTCAACTCTCTACTCTGCTGCTTCTTCTTCACTCACTCCCTCACTCCCAACTGCTCTTCATTTCTCTATGGCTGGTCGTAAAGACAAAGCTCAGTCAGCTCGCGCGTCTCGAGTTCTCATCGCCATCGCAATCGGAGTTTTTCTTGGCTGCCTTTTTGCTTTCTTCTATCCTCATGGCCTTTTCTCCTCTGATCTGCCTATCCAAAACCGTCGACTCGGCAAATCGCAGTTTCAGGTTCAGTCTTCTTCCCCATGCGAATCTTCAGAGCGGTTGAAGAACCTTAAAGCCAATGTCGCTTCAATGTTAGAGAAGAACTCCCAGTTGGAGAAGCATATCAAGGATCTTACAAGAGAGCTGAGGATAGTGGAACAGTTAAAAGATCATGCTGAAAAGCAATATCTGGCGCTCGGTGAAAATCACAAGGCTGGTCCATTTGGTACTGTCAAAGGTCTTAGAACCAATCCCACTGTAATCCCCGATGAATCTGTGAATCCTCGATTGGCAAAGCTCATGGAAAAAGTTGCTATTCAGAAAGAGCTGATTGTGACACTTGCAAATTCTAATGTAAAACCCATGTTGGAGGTTTGGTTTACAAGCATCCAAAAGGTCGGTATACACAATTATTTAGTCGTGGCTCTGGACGACCAGACCGAAGAATTCTGCATCTCCCATGATGTTCCTGTCTACAAGAGAGATCCAGACAATAGCATTGATTCGGTCGGAAGGGAAGGAGGCAACCATCAAGTCTCTGCATTGAAGTTTCGCATTCTGAGGGAGTTCCTGCAACTTGGATACAGTGTTCTTCTCTCAGACGTTGATATAGTCTACTTGCAGAACCCTTTCGATCATCTTTACCGGGATTCGGATGTGGAGTCGATGAGTGATGGTCACAACAATATGACAGCTTATGGATACAACGATGTATTTGATGAACCTGCCATGGGTTGGGCTAGATATGCCCACACTATGAGAATATGGGTTTACAACTCTGGTTTCTTCTTCATTAGGCCTACACTTCCTTCATTGGAGCTTTTGGATCGTGTCGCTACTCGGCTTTCTCAAGAAAAGGCATGGGACCAAGCTGTTTTTAACGAGGAACTCTTTTACCCTTCTTGTCCTGGACGTGATGGGCTTCATGCCTCCAAGAGAACCATGGACATGTATCTCTTCATGAACAGTAAAGTACTCTTCAAGACTGTTCGAAAGGACCCGAAACTGAGACAATTGAAACCTGTTATCGTTCATATAAATTACCATCCTGACAAGTATCCTAGAATGAAAGCAGTTGTAGAATTCTACGTCGACGGTAAGCAAAATGCTCTGGATCCATTCCCAGATGGTTCTGAATGA 2907 44.41 MPSYMSKLRAPVKFLGWEGGLKSSLELLLGHQKLLCGNSSLFHSVPYSSLTELHALLRPGTISGASSELVNRRRNISVLGAISRTFSIPSVSSPAFQTCGYHIDCAIAEAYQYSTHSNCQDKPMAACGSRATLGECSFDKLSFRNAAHLSPSAISAGICFNSRSVDSCRKASMSLKNQEQPSNNVIYGYFTYNIAKRFCSSYLHTVSGVRDLHSSSTSQSAAGSAPNVSFDNSAREEQLANSTDSSEQKISMGKSLKLVSGSCYLPHPDKEDTGGEDAHFICVDEQAIGVADGVGGWADLGVDAGQYSRELMSNSVSAVQEEPKGSIDPARVLEKAHSKTKAKGSSTACIIALTEQGLHAINLGDSGFMVVRDGCTIFRSPVQQHDFNFTFQLESGNNGDLPSSGQVFSVPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGAQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYVTSSNDNKPPIFNSRKIFPFSNSTLYSAASSSLTPSLPTALHFSMAGRKDKAQSARASRVLIAIAIGVFLGCLFAFFYPHGLFSSDLPIQNRRLGKSQFQVQSSSPCESSERLKNLKANVASMLEKNSQLEKHIKDLTRELRIVEQLKDHAEKQYLALGENHKAGPFGTVKGLRTNPTVIPDESVNPRLAKLMEKVAIQKELIVTLANSNVKPMLEVWFTSIQKVGIHNYLVVALDDQTEEFCISHDVPVYKRDPDNSIDSVGREGGNHQVSALKFRILREFLQLGYSVLLSDVDIVYLQNPFDHLYRDSDVESMSDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWVYNSGFFFIRPTLPSLELLDRVATRLSQEKAWDQAVFNEELFYPSCPGRDGLHASKRTMDMYLFMNSKVLFKTVRKDPKLRQLKPVIVHINYHPDKYPRMKAVVEFYVDGKQNALDPFPDGSE 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30543446 30550993 + CcPI632755_05g021720.1 Cco05g2172 179800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2172 968 Pfam Protein phosphatase 2C 277 440 - -
Cco05g2172 968 Coils Coil 610 651 - -
Cco05g2172 968 MobiDBLite consensus disorder prediction 214 248 - -
Cco05g2172 968 SUPERFAMILY PP2C-like 263 495 IPR036457 -
Cco05g2172 968 Gene3D - 401 505 IPR036457 -
Cco05g2172 968 PANTHER ARABINOSYLTRANSFERASE RRA3 546 968 IPR044290 GO:0016757(InterPro)|GO:0080147(InterPro)
Cco05g2172 968 SMART PP2C_4 249 496 IPR001932 -
Cco05g2172 968 ProSiteProfiles PPM-type phosphatase domain profile. 262 498 IPR001932 -
Cco05g2172 968 SMART PP2C_SIG_2 272 498 IPR001932 -
Cco05g2172 968 FunFam 5-azacytidine resistance protein azr1 267 392 - -
Cco05g2172 968 Pfam Nucleotide-diphospho-sugar transferase 724 941 IPR005069 -
Cco05g2172 968 Gene3D - 270 390 IPR036457 -
Cco05g2172 968 SUPERFAMILY Nucleotide-diphospho-sugar transferases 700 889 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2172 K17508 - - csv:101205693 934.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0581 Cco-Chr2:5634090 Cco05g2172 Cco-Chr5:30543446 7.80E-171 dispersed
Cco03g0042 Cco-Chr3:386847 Cco05g2172 Cco-Chr5:30543446 1.80E-34 dispersed
Cco05g2172 Cco-Chr5:30543446 Cco07g0970 Cco-Chr7:22498656 2.20E-125 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g908 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1138 Cone8ag1186 . . Lsi04g01643 Csa03g04187 Chy04g00531 . Blo17g00809 . Bda08g01292 . . Bpe05g00083 . Bma05g00111 . . . . . . Car09g00151 . . . . . . . . . Cla05g01960 Cam05g2108 Cec05g2119 Cco05g2172 Clacu05g2097 Cmu05g1974 Cre05g2093 . . . Cme04g00611
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001014 3 2 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 6 3 2 2 2 2 2 2 2 2 9 5 2 83