Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2174 ATGTCTGTGGCTACGAAGCCCCAATCGCACGCTAAACCGGTTTTGGAGTCCCGAGCAATTCTTGGACCCGGCGGGAACAGAGATAGGGCGCCTGAGAAGCCGAAATGTAAACAGGAGACTTTGAAGAAGGTAGAGAAGCAGAACAAGGCGCTTCCGGTCATTTCTGAATCGGTTATTCGAGACAATGCCTCCGTCGGAAGCTCCTGCTCTTCCGACTCTCTATCAAGCAATTATTCCGCCAAATTGTCGAATCCCAAAGTGAAGCTTTACGCTGTGAAGCCTGTGAAGGCTGTTGCTGCCGGCGGTGACTCAAACGCCACCATAACGTCGCCTAGGCTCTCGCTTCCGGGGAAACGCTGTGATTGGATAACACTTCATTCAGACCCACTTTACATCGCTTTTCATGACGAAGAATGGGGAGTCCCAGTTCATGACGACAAGAAGCTGTTTGAGTTACTTGTATTATCACAAGCCTTAGCAGAACTTACTTGGCCTTTGATTCTTAGCAAGAGAGATATATTTAGGAAAGTTTTGAATGATTTTGACCCATCTTCCATCGCACAGTTCACAGAGAATGAGTTTACAACACTGAAAGTAAATGGCATCCAGCTCCTGTCTGAACCAAAGCTTCGTGCGATTGTGGAGAACGCTAATCAAGTACTCAAGATTCAACAGGAATTTGGTTCCTTTAGCAACTATTGTTGGAGCTTTGTTAACAAGAAGCCTATACAAAACAGATTTCGTTACGCTCGTCAAGTACCTGTAAAGACGCCAAAAGCGGAGTTCATGAGTAAGGATTTGATCAAGAGAGGATTTCGTTGTGTCGGGCCAACTGTGGTTTATTCCTTCATGCAGGTTGCTGGAATTGTCAACGATCACTTGGTCAATTGCTTCAGATATCAAGAGTGTGATGCGAAGATAAAAGACGATATGAAATTAAGAGTAGAAGATCAACGATCGCAGTTGCTTACCAGAGCTCTTGAGAAGCCTTGCTTGACTAGATCCTGA 1008 45.34 MSVATKPQSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKKVEKQNKALPVISESVIRDNASVGSSCSSDSLSSNYSAKLSNPKVKLYAVKPVKAVAAGGDSNATITSPRLSLPGKRCDWITLHSDPLYIAFHDEEWGVPVHDDKKLFELLVLSQALAELTWPLILSKRDIFRKVLNDFDPSSIAQFTENEFTTLKVNGIQLLSEPKLRAIVENANQVLKIQQEFGSFSNYCWSFVNKKPIQNRFRYARQVPVKTPKAEFMSKDLIKRGFRCVGPTVVYSFMQVAGIVNDHLVNCFRYQECDAKIKDDMKLRVEDQRSQLLTRALEKPCLTRS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30557899 30560672 + CcPI632755_05g021740.1 Cco05g2174 179802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2174 335 MobiDBLite consensus disorder prediction 1 37 - -
Cco05g2174 335 Pfam Methyladenine glycosylase 126 299 IPR005019 GO:0006284(InterPro)|GO:0008725(InterPro)
Cco05g2174 335 PANTHER OS04G0501200 PROTEIN 15 307 - -
Cco05g2174 335 SUPERFAMILY DNA-glycosylase 118 303 IPR011257 GO:0003824(InterPro)|GO:0006281(InterPro)
Cco05g2174 335 Gene3D Hypothetical protein; domain 2 117 301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2174 K01246 - - csv:101206397 541.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2015 Cco-Chr2:33133358 Cco05g2174 Cco-Chr5:30557899 2.30E-52 dispersed
Cco05g2174 Cco-Chr5:30557899 Cco09g0318 Cco-Chr9:2773026 2.60E-73 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g905 . . Bda01g00541 . . Bpe04g00208 Bma04g00202 Bma01g02308 . . Cma01g01891 Cma09g00172 Car01g01475 . . . . . . . . . . . . . . . . . . Cone4ag1897 . Cone17ag1326 . Lsi04g01642 Csa03g04186 Chy04g00532 . . . . . . . . . . Cmo01g01954 Cmo09g00167 . . . Car09g00152 . Cpe02g00141 . . . . . . . Cla05g01961 Cam05g2110 Cec05g2121 Cco05g2174 Clacu05g2099 Cmu05g1976 Cre05g2095 . . . Cme04g00612
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008489 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 35