Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2177 ATGGCGCTCCGGAGATCAATTTCCAAGCGCTTTCTTCATGCTTACACCACTAATCCATCTTCTTCCTCTCTCAATATCATCTTCCGCCGTCATTATCTTTCTCCTCCTGCGGATTCCGCTGGGAAGTCTGTTTTCCGACGCTTTCTTCAGAGGAGAGCGATCTATCATTCGCCTTCCGCGCCTCCGCGGATTCCCGAGTTGTTGTCCATGCCTGTTGGTGATAAACTTCGAGAAAAGCTGGGAGGTAGCAACATTACTGGAGATCGAATCCGGCTCGACGGCCTCATTCCTCCAGCGTCTTTTGAAAATGAACGCTATGTTTCTGGATGTGGAATTTCAATCGATGATGCTAGGAAGATCATAAGGCTGTCGCAGGTCGAGAGGCTTAAAACGAAACTGAGAAATATTCCGATGAGTTCGATTTCTTACTCGGAGTTCACTCGGATCTGTGTTGAAGATTGTGGGAATAACAAGGAACAGGGTGCTGAATTCGCTAAGTTGTTGGATGAATCTGGAAGCGTCATCGTGCTTGGGAATATCGTGTTCCTCCGCCCGGATCAGGTGGCAAAATCAATGGAGACAATGATATCTCGATCAATGGCAACACCAAACGACCCAAGATTGAAACAACTAGACGAAATGGAGAAGCAAAAGGCAATGATTGACAAAAAGGCCAAGGCCCAAGTTCAGGCGGAGTTATTTTGTGGATTGGGCCTTTTATTGGGCCAAACATTGGGCTTCATGAGGCTTACATTCTGGGAGCTAAGTTGGGACGTAATGGAGCCCATTTGCTTCTTCGTTACATCCCTTCACTTTGCACTCGGCTATGGCTTCTTCCTCTCAACTTCCACAGAGCCCACATTCGAAGGCTTCTTCCGACGTCGTTTCAAAGCTAAGCAGAAGAAACTCATGGCTTCTCATAATTTTGATATCAACAATTACAATGAACTCAGAAGAATTTGCTATCCAAACCATAGAGGAGCTTTACCAAATGAAGAAGGAGCCTTGTTTTCTGCTGCTCACACTTCATCATAA 1035 45.89 MALRRSISKRFLHAYTTNPSSSSLNIIFRRHYLSPPADSAGKSVFRRFLQRRAIYHSPSAPPRIPELLSMPVGDKLREKLGGSNITGDRIRLDGLIPPASFENERYVSGCGISIDDARKIIRLSQVERLKTKLRNIPMSSISYSEFTRICVEDCGNNKEQGAEFAKLLDESGSVIVLGNIVFLRPDQVAKSMETMISRSMATPNDPRLKQLDEMEKQKAMIDKKAKAQVQAELFCGLGLLLGQTLGFMRLTFWELSWDVMEPICFFVTSLHFALGYGFFLSTSTEPTFEGFFRRRFKAKQKKLMASHNFDINNYNELRRICYPNHRGALPNEEGALFSAAHTSS 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30590304 30592666 + CcPI632755_05g021770.1 Cco05g2177 179805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2177 344 PANTHER CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL 63 325 IPR039055 GO:0005262(PANTHER)|GO:0015292(PANTHER)|GO:0031305(PANTHER)|GO:0036444(PANTHER)|GO:0051560(InterPro)|GO:0051560(PANTHER)|GO:1990246(PANTHER)
Cco05g2177 344 Pfam Mitochondrial calcium uniporter 159 317 IPR006769 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2177 K20858 - - csv:101211280 526.168
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2023 Cco-Chr2:33203913 Cco05g2177 Cco-Chr5:30590304 8.80E-38 dispersed
Cco04g1376 Cco-Chr4:29138908 Cco05g2177 Cco-Chr5:30590304 7.20E-68 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g891 . Blo12g00913 . . . . Bma04g00199 . . . Cma01g01888 Cma09g00174 Car01g01472 . . Cpe06g00124 . . . . . . . . . . . . . . . . Cone7ag1802 Cone17ag1321 Cone20ag0155 Lsi04g01639 Csa03g04182 Chy04g00535 . Blo17g00814 . Bda08g01299 . . . . . . Cmo01g01951 Cmo09g00171 . . . Car09g00156 . Cpe02g00144 . . . . . . . Cla05g01963 Cam05g2113 Cec05g2124 Cco05g2177 Clacu05g2102 Cmu05g1978 Cre05g2097 . . . Cme04g00615
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007938 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 2 1 2 1 1 36