Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2205 | ATGAACACACCATCTTCCTTGCCTGACCTCTCCTTGCAGATCAGTCTTCCGATGTCCATGATGTTGACACCGCCGTGTGAGACGAAGGCCAAGCCACGGAGCTCAACCACCACGGATTCGAGTTGTAGTGGCAAAAGTGATTTGAGCCATGAAAATGGTCTCTTCCGTTTAGGGTTTGAAGTGGGAGATATGGATGTTCTTCCTCGCCGGCGTCATCATAATGTCCGTGGCCGCCGCGATTTCAAAAGAAGCGGTGGTGGTGTCGGGTGTGGAGTAAGAAGAAGCATCAGAGCTCCAAGAATGAGATGGACTACAACTCTACATGCTCATTTTGTACATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTTAAGGATCTAACCCTAGCTCATGTCAAAAGCCATTTACAGATGTACAGAACAGTGAAGAATACTGTGAAGGGAACAGATGATTGTGGAAGGACTGAGATTGAAGAAGATGCCATTGTTTTATCTTCTTCTGTTCAAAAATCTAACTTTCAATCACCTCCTTTGCAGAGAATCCAAAGAAGTAGTTTGGTAACATCAATGCACAAGAGTTGCGACAGGACCAAGTCAAACGCCGACGCTTTCGCTAAATCTAGAGGAATGAAGATCCAATTTCTCAAATTGAACGACAATGGCGATCGAGAATATGGCATCGACATAGTTTCATCGTCGATCTCTGCCGGTGGCCGATTCTGCAGGGAATGGGGTCGCGATCGGCCAGAATTCCTGAAATATGAAAATGCAGGTGGAGATGGGCTTCTATACCGCACCCTTGGAGTGATAGCTGACTATTATTGGTTAGAATTCGGTGTCCAGTTGGCGCTTTGGAATGATTTCTGTCATCAGGAAGCATTGACGCCATGCCCTACCACACTGGCCGCCAACCATATGGGGTCCAGTACAAGTGTAACTATGGCCATTTTAGCATGA | 990 | 46.26 | MNTPSSLPDLSLQISLPMSMMLTPPCETKAKPRSSTTTDSSCSGKSDLSHENGLFRLGFEVGDMDVLPRRRHHNVRGRRDFKRSGGGVGCGVRRSIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKGTDDCGRTEIEEDAIVLSSSVQKSNFQSPPLQRIQRSSLVTSMHKSCDRTKSNADAFAKSRGMKIQFLKLNDNGDREYGIDIVSSSISAGGRFCREWGRDRPEFLKYENAGGDGLLYRTLGVIADYYWLEFGVQLALWNDFCHQEALTPCPTTLAANHMGSSTSVTMAILA | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 30820185 | 30826725 | - | CcPI632755_05g022050.1 | Cco05g2205 | 179833 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2205 | 329 | FunFam | Myb family transcription factor | 97 | 155 | - | - | |
Cco05g2205 | 329 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 3 | 204 | IPR044847 | GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro) | |
Cco05g2205 | 329 | Pfam | Myb-like DNA-binding domain | 100 | 151 | IPR001005 | - | |
Cco05g2205 | 329 | Gene3D | - | 98 | 155 | - | - | |
Cco05g2205 | 329 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 99 | 152 | IPR006447 | GO:0003677(InterPro) | |
Cco05g2205 | 329 | SUPERFAMILY | Homeodomain-like | 96 | 153 | IPR009057 | - | |
Cco05g2205 | 329 | MobiDBLite | consensus disorder prediction | 29 | 47 | - | - | |
Cco05g2205 | 329 | MobiDBLite | consensus disorder prediction | 22 | 47 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2205 | Cco-Chr5:30820185 | Cco09g1174 | Cco-Chr9:11466671 | 2.70E-30 | dispersed | |
Cco05g2205 | Cco-Chr5:30820185 | Cco08g1731 | Cco-Chr8:28589460 | 1.20E-35 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59348 | PF00249 | Myb_DNA-binding | 1.70E-05 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2205 | - | - | - | 0.0 |