Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2205 ATGAACACACCATCTTCCTTGCCTGACCTCTCCTTGCAGATCAGTCTTCCGATGTCCATGATGTTGACACCGCCGTGTGAGACGAAGGCCAAGCCACGGAGCTCAACCACCACGGATTCGAGTTGTAGTGGCAAAAGTGATTTGAGCCATGAAAATGGTCTCTTCCGTTTAGGGTTTGAAGTGGGAGATATGGATGTTCTTCCTCGCCGGCGTCATCATAATGTCCGTGGCCGCCGCGATTTCAAAAGAAGCGGTGGTGGTGTCGGGTGTGGAGTAAGAAGAAGCATCAGAGCTCCAAGAATGAGATGGACTACAACTCTACATGCTCATTTTGTACATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTTAAGGATCTAACCCTAGCTCATGTCAAAAGCCATTTACAGATGTACAGAACAGTGAAGAATACTGTGAAGGGAACAGATGATTGTGGAAGGACTGAGATTGAAGAAGATGCCATTGTTTTATCTTCTTCTGTTCAAAAATCTAACTTTCAATCACCTCCTTTGCAGAGAATCCAAAGAAGTAGTTTGGTAACATCAATGCACAAGAGTTGCGACAGGACCAAGTCAAACGCCGACGCTTTCGCTAAATCTAGAGGAATGAAGATCCAATTTCTCAAATTGAACGACAATGGCGATCGAGAATATGGCATCGACATAGTTTCATCGTCGATCTCTGCCGGTGGCCGATTCTGCAGGGAATGGGGTCGCGATCGGCCAGAATTCCTGAAATATGAAAATGCAGGTGGAGATGGGCTTCTATACCGCACCCTTGGAGTGATAGCTGACTATTATTGGTTAGAATTCGGTGTCCAGTTGGCGCTTTGGAATGATTTCTGTCATCAGGAAGCATTGACGCCATGCCCTACCACACTGGCCGCCAACCATATGGGGTCCAGTACAAGTGTAACTATGGCCATTTTAGCATGA 990 46.26 MNTPSSLPDLSLQISLPMSMMLTPPCETKAKPRSSTTTDSSCSGKSDLSHENGLFRLGFEVGDMDVLPRRRHHNVRGRRDFKRSGGGVGCGVRRSIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKGTDDCGRTEIEEDAIVLSSSVQKSNFQSPPLQRIQRSSLVTSMHKSCDRTKSNADAFAKSRGMKIQFLKLNDNGDREYGIDIVSSSISAGGRFCREWGRDRPEFLKYENAGGDGLLYRTLGVIADYYWLEFGVQLALWNDFCHQEALTPCPTTLAANHMGSSTSVTMAILA 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30820185 30826725 - CcPI632755_05g022050.1 Cco05g2205 179833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2205 329 FunFam Myb family transcription factor 97 155 - -
Cco05g2205 329 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 3 204 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Cco05g2205 329 Pfam Myb-like DNA-binding domain 100 151 IPR001005 -
Cco05g2205 329 Gene3D - 98 155 - -
Cco05g2205 329 NCBIfam myb-like DNA-binding domain, SHAQKYF class 99 152 IPR006447 GO:0003677(InterPro)
Cco05g2205 329 SUPERFAMILY Homeodomain-like 96 153 IPR009057 -
Cco05g2205 329 MobiDBLite consensus disorder prediction 29 47 - -
Cco05g2205 329 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2205 Cco-Chr5:30820185 Cco09g1174 Cco-Chr9:11466671 2.70E-30 dispersed
Cco05g2205 Cco-Chr5:30820185 Cco08g1731 Cco-Chr8:28589460 1.20E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59348 PF00249 Myb_DNA-binding 1.70E-05 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2205 - - - 0.0