Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g2212 | ATGGCGGTTGTCACTGATCCTCTTGCTTCCATGCAGCTTCTCGCCAATACCCTTCAGGCTCCGCCGTATGCGGCAGCCGCCGTTCTGGGTGGCATCTCTTTAATGCTTTCGGTGTTTCTTGTCGCTGATTGTAGAAAGAAACGTCGGAATTTTCTCCCTCCAGTGCCGGCGATTCCGGGGGTGCCGCTGTTGGGAAATCTGTTGCAGTTGAAGGAGAAGAAGCCTCACATGACGTTTGCACGGTGGGCCGAGACGTACGGTCCGGTTTATTCCATAAGAACCGGCGCTTCCAGTGTGATTGTTCTCAACACCGCCGAAGTTGCCAAAGAGGCTATGGTGACGAGATACGCTTCTATTTCTAGTAGAAAGCTAAGCAAAGCCCTCACCATCTTGACTGCTGATAAATGCATGGTTGCTATGAGTGATTACAATGACTTTCACAAGATGGTGAAGAGATACATATTGGCGAATGTCTTGGGGGCTAACGCTCAGAAGAAACACAGACAAAGGAGAGACACCATGATAGAGAATATTTCTAGGGAGTTGTTTGCTCATCTGAAGGATTTTCCATCAGAAACTGTTAATTTTCGAAAAATCTTCGAAGCAGAACTCTTTCGACTGGCTCTTAAAGAAACACTTGGGAAAGATGTCGAGTCGATATATGTCGATGGGCTCGGTACGACATTGCCAAGGGAAGATCTGTTTAGGGTTTTAGTGATTGATCCAATGGAGGGTGCAATTGAGGTTGATTGGAGGGATTTCTTCCCATATCTGAGATGGATCCCCAACAAGAGTGTGGAGAATAGAATAAAGAACATGGATTTTCGAAGGCGAATGACAATGAAAAGCCTACTTGAGGAGCAGAAGAAACGAATTGCAGCAGGGGAGGAAACGAATTGCTATGCTGATTTCCTGTTATCTGAAGCAACAACACTTACAGAGGATCAGATATCGATGTTACTTTGGGAGACAATCATTGAAACCTCAGACACGACTCTGGTTGTAACAGAATGGGCTATGTATGAACTTGCAAAAGATCCGAAACGACAGGATTATCTGTATCAGCATATACTGAATGTCTGTGGATCTGCAAAGCTTACTGAAGAAAACCTGTCACAGCTTCCATATCTAACTGCTGTTTTTCATGAAACTCTTCGGAGGCATAGTCCAGTCCCGGTCGTCCCATTGCGATACGCGCATGAAGATACCCAAATAGGCGGGTACTTTGTTCCTGCAGGGAGTGAGATCGCTGTGAACATTTACGCGTGCAACATGGACAAGAATCATTGGGAAAGCCCTGAGGAATGGAAGCCAGAGAGGTTTCTGGATGAGAAGTATGATCCAATGGATCTCCACAAAACCATGGCCTTTGGAGGAGGGAAGAGGGTGTGTGCAGGTGCTCTTAAGGCAATGCTGATAGCTTGCACAACCATTGGAAGGATGGTTCAAGAGTTTGAGTGGAGGCTAAGGGACGGGGAAGAGGACAAAGTGGACACTCTCGGCCTCACGGCTCGCAAGCTCCAGCCTCTGCACGTAGTCGTGAAGCCAAGAATCAACTAA | 1560 | 46.86 | MAVVTDPLASMQLLANTLQAPPYAAAAVLGGISLMLSVFLVADCRKKRRNFLPPVPAIPGVPLLGNLLQLKEKKPHMTFARWAETYGPVYSIRTGASSVIVLNTAEVAKEAMVTRYASISSRKLSKALTILTADKCMVAMSDYNDFHKMVKRYILANVLGANAQKKHRQRRDTMIENISRELFAHLKDFPSETVNFRKIFEAELFRLALKETLGKDVESIYVDGLGTTLPREDLFRVLVIDPMEGAIEVDWRDFFPYLRWIPNKSVENRIKNMDFRRRMTMKSLLEEQKKRIAAGEETNCYADFLLSEATTLTEDQISMLLWETIIETSDTTLVVTEWAMYELAKDPKRQDYLYQHILNVCGSAKLTEENLSQLPYLTAVFHETLRRHSPVPVVPLRYAHEDTQIGGYFVPAGSEIAVNIYACNMDKNHWESPEEWKPERFLDEKYDPMDLHKTMAFGGGKRVCAGALKAMLIACTTIGRMVQEFEWRLRDGEEDKVDTLGLTARKLQPLHVVVKPRIN | 519 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 30863169 | 30865413 | + | CcPI632755_05g022120.1 | Cco05g2212 | 179840 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g2212 | 519 | SUPERFAMILY | Cytochrome P450 | 53 | 517 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2212 | 519 | Pfam | Cytochrome P450 | 59 | 498 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2212 | 519 | CDD | CYP77_89 | 85 | 511 | - | - | |
| Cco05g2212 | 519 | PRINTS | E-class P450 group I signature | 378 | 396 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2212 | 519 | PRINTS | E-class P450 group I signature | 83 | 102 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2212 | 519 | PRINTS | E-class P450 group I signature | 464 | 487 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2212 | 519 | PRINTS | E-class P450 group I signature | 107 | 128 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2212 | 519 | PRINTS | E-class P450 group I signature | 454 | 464 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2212 | 519 | PRINTS | E-class P450 group I signature | 336 | 362 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2212 | 519 | PRINTS | E-class P450 group I signature | 419 | 443 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2212 | 519 | PANTHER | ENT-KAURENE OXIDASE, CHLOROPLASTIC | 23 | 517 | IPR044225 | GO:0005506(InterPro)|GO:0005783(PANTHER)|GO:0009686(PANTHER)|GO:0009686(InterPro)|GO:0009707(PANTHER)|GO:0010241(PANTHER)|GO:0010241(InterPro)|GO:0016709(PANTHER)|GO:0020037(InterPro)|GO:0052615(InterPro) | |
| Cco05g2212 | 519 | FunFam | Ent-kaurene oxidase 2 | 46 | 519 | - | - | |
| Cco05g2212 | 519 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 457 | 466 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco05g2212 | 519 | Gene3D | Cytochrome P450 | 45 | 519 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g2212 | Cco-Chr5:30863169 | Cco10g1624 | Cco-Chr10:29607769 | 1.00E-52 | dispersed | |
| Cco05g2203 | Cco-Chr5:30802713 | Cco05g2212 | Cco-Chr5:30863169 | 3.50E-37 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g2212 | K04122 | - | csv:101209283 | 973.385 |