Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2233 ATGCAGAGCAACGGTTCTGATTCGCAGCCGCAGGAACCAAATCAACGGCATCATCAGCCGCAGCAGCCGTGGATACCAATGCAGTACCCGCCGCCGGCCATGGTAATGCCTCACCATATGTTGACGCCGCCCCTCCCCCCGCCGTATATGCATTATCATCACCAATATCAGCATCATCATCTCCCTATTCAGCATTCGCAACCGCTACCGGGATCTGGCGGCGAAAATAAGACGATTTGGGTCGGTGACTTGCATCATTGGATGGACGAGAGTTACCTCAATTCCTGCTTTTCTTCCATTGGCGAGATTGCAGCTCTCAAGGTCATTCGTAATAAGCAAACTGGTTTGTCTGAGGGGTATGGATTTGTAGAATTTTTTTCCCATGCAACAGCTGAGAAAGCTCTTCAGAACTATTCCGGAGTGTTCATGCCAAATACAAAGCAAACTTTCCGCCTCAATTGGGCAACGTTTAGCACCAGTGACAAGCGATCAGATAATGATCCTGATCTTTCTATTTTTGTTGGAGACTTAGCTGCAGACGTTACTGATTCTTTGTTGTACGAAACATTTTCTAGTAAATTTCCTTCGGTTAAAGCAGCAAAAGTTGTAATTGATGCCAACACTGGTCGTTCAAAGGGTTATGGTTTCGTGCGGTTTGGAGATGACAATGAAAGGTCTCAGGCCATGACTGAAATGAATGGTGTATATTGTTCAAGCAGACCTATGCGCATTGGTGCAGCAACGCCCAAAAAGTCCTCTGGATTTCGGCAAAAGCATTCTCCACAAGGAGGATATTCAACAAATGGTTCCTTTAGCCATGGCCTCCAATCTGAAGGAGATTCTGCGAATACAACTATATTTGTTGGAGGGCTGGATCCTAATGTCACCGATGAAGATCTGCGACAACCTTTCTTGCAGTATGGTGAGATAGTCTCTGTTAAAATACCAGTTGGTAAAGGATGTGGGTTTGTCCAATTTGCCAACAGAAATGATGCTGAAGAGGCTTTGCAGAAACTAAATGCAACTGTAATTGGCAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAATCCAGCAAATAAGCAGTTCAGAGATTTTGGGAACCAGTGGAATGGAGCTTACTACGGAGGCCACATATATGATGGCTATGGATATGGTCTGCAACCTCATCACGATCCAAGTATGTATCACGCAGCTTATGGAGCTTACACTGTTTATGGAAGCCATCAACAACAAGTAGTCTGA 1242 45.25 MQSNGSDSQPQEPNQRHHQPQQPWIPMQYPPPAMVMPHHMLTPPLPPPYMHYHHQYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEIAALKVIRNKQTGLSEGYGFVEFFSHATAEKALQNYSGVFMPNTKQTFRLNWATFSTSDKRSDNDPDLSIFVGDLAADVTDSLLYETFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPKKSSGFRQKHSPQGGYSTNGSFSHGLQSEGDSANTTIFVGGLDPNVTDEDLRQPFLQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNATVIGKQTVRLSWGRNPANKQFRDFGNQWNGAYYGGHIYDGYGYGLQPHHDPSMYHAAYGAYTVYGSHQQQVV 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31080832 31084155 - CcPI632755_05g022330.1 Cco05g2233 179861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2233 413 SMART rrm1_1 78 153 IPR000504 GO:0003723(InterPro)
Cco05g2233 413 SMART rrm1_1 285 352 IPR000504 GO:0003723(InterPro)
Cco05g2233 413 SMART rrm1_1 171 245 IPR000504 GO:0003723(InterPro)
Cco05g2233 413 SUPERFAMILY RNA-binding domain, RBD 276 376 IPR035979 GO:0003676(InterPro)
Cco05g2233 413 SUPERFAMILY RNA-binding domain, RBD 151 272 IPR035979 GO:0003676(InterPro)
Cco05g2233 413 MobiDBLite consensus disorder prediction 253 269 - -
Cco05g2233 413 CDD RRM1_SECp43_like 78 158 - -
Cco05g2233 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 157 IPR000504 GO:0003723(InterPro)
Cco05g2233 413 FunFam Polyadenylate-binding protein RBP47B 76 156 - -
Cco05g2233 413 SUPERFAMILY RNA-binding domain, RBD 47 159 IPR035979 GO:0003676(InterPro)
Cco05g2233 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 356 IPR000504 GO:0003723(InterPro)
Cco05g2233 413 FunFam Polyadenylate-binding protein RBP47 266 385 - -
Cco05g2233 413 CDD RRM2_SECp43_like 169 248 - -
Cco05g2233 413 MobiDBLite consensus disorder prediction 1 22 - -
Cco05g2233 413 CDD RRM3_NGR1_NAM8_like 283 354 - -
Cco05g2233 413 MobiDBLite consensus disorder prediction 247 269 - -
Cco05g2233 413 Pfam RNA recognition motif 286 349 IPR000504 GO:0003723(InterPro)
Cco05g2233 413 Pfam RNA recognition motif 172 241 IPR000504 GO:0003723(InterPro)
Cco05g2233 413 Pfam RNA recognition motif 79 146 IPR000504 GO:0003723(InterPro)
Cco05g2233 413 Gene3D - 156 275 IPR012677 -
Cco05g2233 413 Gene3D - 276 388 IPR012677 -
Cco05g2233 413 FunFam Polyadenylate-binding protein RBP47B 158 260 - -
Cco05g2233 413 Gene3D - 76 155 IPR012677 -
Cco05g2233 413 MobiDBLite consensus disorder prediction 1 28 - -
Cco05g2233 413 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 55 357 IPR050825 GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005829(PANTHER)
Cco05g2233 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 249 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2233 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0474 Cco-Chr3:4998865 Cco05g2233 Cco-Chr5:31080832 2.50E-106 dispersed
Cco05g2228 Cco-Chr5:31020028 Cco05g2233 Cco-Chr5:31080832 4.80E-216 dispersed
Cco05g2229 Cco-Chr5:31031510 Cco05g2233 Cco-Chr5:31080832 6.30E-223 dispersed
Cco05g2233 Cco-Chr5:31080832 Cco09g1956 Cco-Chr9:33559879 4.70E-125 dispersed
Cco05g2230 Cco-Chr5:31049340 Cco05g2233 Cco-Chr5:31080832 1.70E-212 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117