Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2240 ATGGCCGGACACGAGCGGCACGTGACGACGTGGAAAACGGAAATGGTAATACTCATGTCTAATCTCGGCCTGTCCCTTTCTAAGTGGCGATTGGCGACTGACGGAGATGAGAACGGAGCCGGCATTAGGGGTATTTTAGTCATTCGCCAGTCTCACTCGTGTCAACACTCCACCGATCTTTCAGTTGCACCACATTGGTGCAAGTTCGTTAGGAAAAAGCTTGAAGACAAGGACAAACTGAGTGGTCAGTGCTTCATTATCCGGAGCTGCAAGATTTTCCTTTACAGGATTTTGGATTCACAGAGAGAAGAGAAGACGAGGATAAAGATGTGGGGATTTGGAGGAAGGTATTACTGGGGAAGAAGAGAGCGACTCGAGAAAGTCGAAGGGATTGTTGTGGCGTTCGCATGGATGTCTAGTCAGGAGCGGCACTTGAAACGATATGTGGACATGTATTCCTCTCTGGGTTGGAATTCACTCGTTTGCCATTCTGAATTCCTAAATATAAAGGCAAATTTATTTTGCCAGCTTCTCGAGATGTCTAGCGGCTATTCTTCAAATTCTATCTTCATCTGTTGTAATGTTCATTTAACGAGTACGCTTACAGATACTAAGAGGGAATTGGGATATGGGATTTTGGATTTACTTTCTTTGTTGGCTGAAAAATTGAAGACAATAATGCCTAGATTCATATGGCAGGGAACTAGCGCTGGGAGGTTCTTCCCCGATAAGGCTGCATCTCTGGCATTTGACATTCTTAAAGTACTAGTCGAGGAGCTAAAAATTAAGAGATGCCCTGTAGTATTTGCATCATTTTCTGGTGGGCCAAAAGCATGCATGTATAAGGTTCTCCAGATAATTGAGGGATACCATGAACCGCAACAACATAGTTCGGATGATTATCAACTGGTCAGGGACTGCCTTGCTGGCTATATTTATGATTCCAGTCCAGTTGATTTTACCAGTGACTTGGGAACTCGATTTATTCTTCATCCAACTGTGATGAAAGCATCCCAACCACCAAGAATAGTATCATGGGCAGCACATAACATTGCTTCTGGTCTTGACGCACTCTTCCTCAACAGATTTGAATCACACCGTGCAGAATATTGGCAAACTCTTTATGCTTCAGTTAGTATGAAAGCTCCTTATCTTATTTTGTGCTCGGAAGAGGATGATCTTGCTCCCTATCAGACAATCTTCAATTTTGCTCAACGACTAGAAGATCTTGGGGGAGATGTTAAATTAATGAAATGGAATGGCTCCCCACATGTAGGGCATTATCTGCATTTTCCCAATGAATATAGAGCTGCTGTCACAGAGTTGCTAGGTAAGGCCGCTGGAGTTTACTGTCAAAGAACTAGACCTGATGAAGAAGTAACTGCCGTGGATAAAATGAATGGCGACTCTTGCAATACAACACCTGAAGTTAGAAAATCTGCATCTCCATCAAGTAGCTTTCAGGAGCCTGCTCTAGCTCCAAATGACCATCTTCTCTTCTCGAGCACGATGGATGGATTTGACTACAGGGTCATAGGATCCATGCGAGACGAACACATGGAAGGAGTAATGCAGCTATCTAATTCGCCAAGTACCATTCCTCATGGAGTTCTCGGTCAAATCCTTTACGATGTTTCTGTTCCGAAGAACGTTGAGGATTGGGACATTGGATCATCAAGTTCTTCAAATGGTGTCTTGCGTGAGCACACAAGACGGCATACTTCCTTCAATCCCATCAAACTGATGCGTCGCTCAAGACTAGACAAGGAATTTACTGGTTTGTTGAAAACTTTGGCTATTGGGAAACTATGGAGCAAGCAACAATGTAAAATCTTCGGCAAGTTCGGTCACTTTGCCTTCGTTGAAAGTATGAAGGTTCTTGTAACTGGAGCGTCTGGGTATCTGGGCGGAAGGCTATGCCGTGCATTACTGAACCGAGGCTTCTCTGTTCGGGCTTTGGTCCGTCCGACCAGCGACCTTTCTGCTCTTCCTCATGATCCTTCTGCTCTTGAGCTCGTTCATGGCGATATCACCGACTACCAGTCGCTTCTAGAGGCATGCTCGGGCTGCCATGTCGTCTTCCACGCGGCCGCAATGGTCGAGCCATGGCTTCCTGATCCATCGAAATTCATCTCTGTTAATGTACGAGGGTTGGAGAACGTGTTGCAAGCGGTTAGAGAGACGAAAACAATCGAGAAGATTATATATACGTCGTCCTTTTTCGCGCTTGGCTCAACCGATGGGTATGTTGCCGATGAAAAACAGGTCCATCACGAGAAATTCTTTTGTACAGAGTACGAGAAATCGAAGGCCATTGCTGACAAGATTGCTTTGCGAGCTGCATCTGAGGGCATTCCGATAGTGCCGGTTTATCCCGGAGTTATCTATGGCGCTGGAAAAGTCACGGCTGGGAATGTTATTGCCCGCATGCTGATTGAACGGTTCAATGGGCGATTACCCGGATATTTAGGCCATGGGAACGATAGGTATTCTTTTAGCCATGTCGATGATGTGGTAGAAGGGCATATTGCAGCAATGCAGAAAGGTCGAGTAGGGGAAAGGTATCTTCTAACAGGAGAAAATGCATCATTTGTGGAAGTTTTTGACACAGCTGCAGCCGTTACTGGTACAACAAAACCAATCTTTAACATTCCATTGTGGTTAATTGAAACCTATGGCTGGGTTTCAGTTTTGATCTCTCGAATCACAGGGAAACTTCCTCTCATCAGCCCCCCGACTGTGAAGGTTTTGAGACATCAGTGGGCATATTCTTGTGACAAGGCAAAACAAGAGCTGGATTATAACCCCAGAAGCTTAAAAGAAGGATTAGAAGAGATGCTACCATGGCTAAAGAGCTTGGTGGCCCAACTCAACAACCACCCTAAAATCTCATCTATAAGATCTCTGAAAGGGGCAGGGTTCAGGAGGATTCACTGTGAGTGGTCCATCAAGGAGTTAAATTCAACGGTTGGAAACAAATGCGATATGGATTACAAATCGAGTTCAAAGCTCTTAATCCAAAATCCATTATGTTCGGAATGA 3042 44.81 MAGHERHVTTWKTEMVILMSNLGLSLSKWRLATDGDENGAGIRGILVIRQSHSCQHSTDLSVAPHWCKFVRKKLEDKDKLSGQCFIIRSCKIFLYRILDSQREEKTRIKMWGFGGRYYWGRRERLEKVEGIVVAFAWMSSQERHLKRYVDMYSSLGWNSLVCHSEFLNIKANLFCQLLEMSSGYSSNSIFICCNVHLTSTLTDTKRELGYGILDLLSLLAEKLKTIMPRFIWQGTSAGRFFPDKAASLAFDILKVLVEELKIKRCPVVFASFSGGPKACMYKVLQIIEGYHEPQQHSSDDYQLVRDCLAGYIYDSSPVDFTSDLGTRFILHPTVMKASQPPRIVSWAAHNIASGLDALFLNRFESHRAEYWQTLYASVSMKAPYLILCSEEDDLAPYQTIFNFAQRLEDLGGDVKLMKWNGSPHVGHYLHFPNEYRAAVTELLGKAAGVYCQRTRPDEEVTAVDKMNGDSCNTTPEVRKSASPSSSFQEPALAPNDHLLFSSTMDGFDYRVIGSMRDEHMEGVMQLSNSPSTIPHGVLGQILYDVSVPKNVEDWDIGSSSSSNGVLREHTRRHTSFNPIKLMRRSRLDKEFTGLLKTLAIGKLWSKQQCKIFGKFGHFAFVESMKVLVTGASGYLGGRLCRALLNRGFSVRALVRPTSDLSALPHDPSALELVHGDITDYQSLLEACSGCHVVFHAAAMVEPWLPDPSKFISVNVRGLENVLQAVRETKTIEKIIYTSSFFALGSTDGYVADEKQVHHEKFFCTEYEKSKAIADKIALRAASEGIPIVPVYPGVIYGAGKVTAGNVIARMLIERFNGRLPGYLGHGNDRYSFSHVDDVVEGHIAAMQKGRVGERYLLTGENASFVEVFDTAAAVTGTTKPIFNIPLWLIETYGWVSVLISRITGKLPLISPPTVKVLRHQWAYSCDKAKQELDYNPRSLKEGLEEMLPWLKSLVAQLNNHPKISSIRSLKGAGFRRIHCEWSIKELNSTVGNKCDMDYKSSSKLLIQNPLCSE 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31134212 31148945 + CcPI632755_05g022400.1 Cco05g2240 179868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2240 1013 SUPERFAMILY alpha/beta-Hydrolases 218 445 IPR029058 -
Cco05g2240 1013 Gene3D alpha/beta hydrolase 292 444 IPR029058 -
Cco05g2240 1013 MobiDBLite consensus disorder prediction 466 489 - -
Cco05g2240 1013 FunFam NAD(P)-binding Rossmann-fold superfamily protein 623 955 - -
Cco05g2240 1013 Gene3D - 618 954 - -
Cco05g2240 1013 Pfam NAD dependent epimerase/dehydratase family 626 855 IPR001509 -
Cco05g2240 1013 PANTHER UNCHARACTERIZED 100 169 IPR008547 -
Cco05g2240 1013 Pfam Eukaryotic protein of unknown function (DUF829) 308 554 IPR008547 -
Cco05g2240 1013 CDD AR_FR_like_1_SDR_e 626 950 - -
Cco05g2240 1013 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 620 958 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2240 K15891 - - csv:101212227 666.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1159 Cco-Chr5:10666039 Cco05g2240 Cco-Chr5:31134212 2.70E-93 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g783 . . . . . . . . . . Cma01g01851 Cma09g00216 Car01g01444 . . Cpe06g00151 . . . . . . . . . . . . . . . . . Cone17ag0836 Cone20ag0181 Lsi04g01576 Csa04g02394 . . . . . . . . Bma01g00687 . Sed01g2650 Cmo01g01912 Cmo09g00209 . . . Car09g00184 . . Bhi09g03341 Tan01g4811 Cmetu07g1348 . Hepe01g1746 . . Cla05g02027 Cam05g2177 Cec05g2193 Cco05g2240 Clacu05g2170 Cmu05g2037 Cre05g2165 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009167 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 0 2 1 1 34