Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2241 ATGTCCACGAGGAGCGAACATCATACAGTCCCGCTCTCTGTGCTCCTAAGGCGTGAATTGGCGATTGAGAAGATTGAGAGACCAGAAATCTTACATGGTCAGGCGAGTCAGAGTAAGAAAGGGGAGGATTTTACATTGCTAAAGACGGAATGCGAGAGAGTGGTAGGAGATGGAGTCTCAACGTATTCGGTTTTTGGGCTTTTTGATGGACATAATGGATCTGCTGCTGCTATTTATGCTAAGGAGAATTTGTTGAACAATGTTTTAGCTGCTATTCCATCAGATCTCAACAGAGACGAATGGATTGCAGCATTGCCAAGGGCCTTGGTTGCAGGTTTTGTGAAGACAGACAAAGATTTTCAAGAGAAAGCACAAACATCAGGAACCACTGTTACTTTCATGATTATTGAGGGATGGGTTCTCACTGTTGCTTCTGTTGGTGATTCCCGTTGCACTTTGGAATCAGCTGAAGGTGACATCTACTACTTATCAGCAGATCATAGACTAGAATGCAACGAAGAAGAGAGAGAACGTATAATTGCTAGTGGTGGTGAGGTGGGTCGGCTGAATACTGGTGGTGGTGCAGAGATTGGTCCGTTGAGATGCTGGCCTGGTGGCTTATGTCTATCACGATCAATTGGTGATATGGATGTTGGCGAGTTTATAGTGCCTGTTCCCTACGTGAAGCAAGTTAAGCTATCTTCTACTGGTGGTAGGGTTATTATTTCAAGTGATGGTGTTTGGGATGCTTTATCAGCTGAAACTGCCTTTGATTGTTGTCGGGGGATGCCAGTAGAAACTGCTGCCGCACAGATTGTGAAAGAAGCAGTACAGTCGAAGGGACTTCGAGATGATACTACATGTATTGTGATTGACATATTACCAAGGGAGAAACCATCTACTGCTTTGCCGCCACCGAAGAAGCAGGTAAAAGGAATGTTTAAATCAATGTTCCGCAAAAAGTCTTCTGAATCATCTTCTCATTTTGAGAAAGAATATAATGAGCCAGATGTTGTCGAGGAATTATTTGAGGAAGGATCGGCTATGCTGTCAGAAAGGTTAGATGCCAAGTATCCTATCTGCAACATGTTTAAGCTGTTTGTATGTGCAGTATGCCAAATTGAGATCCAACCTCGGGAGGGTATCTCCATATATGCCGGCTCATCTAACAGAGGAAAATTGCGCGCTTGGGATGGACCTTTTCTATGCTTAAGTTGCACAGAGAAGAAAGAAGCTATGGAAGGGAAAAGACCGTCTGGAGATAGACACAGCAGTGGAAGTGACTAG 1287 44.06 MSTRSEHHTVPLSVLLRRELAIEKIERPEILHGQASQSKKGEDFTLLKTECERVVGDGVSTYSVFGLFDGHNGSAAAIYAKENLLNNVLAAIPSDLNRDEWIAALPRALVAGFVKTDKDFQEKAQTSGTTVTFMIIEGWVLTVASVGDSRCTLESAEGDIYYLSADHRLECNEEERERIIASGGEVGRLNTGGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSSTGGRVIISSDGVWDALSAETAFDCCRGMPVETAAAQIVKEAVQSKGLRDDTTCIVIDILPREKPSTALPPPKKQVKGMFKSMFRKKSSESSSHFEKEYNEPDVVEELFEEGSAMLSERLDAKYPICNMFKLFVCAVCQIEIQPREGISIYAGSSNRGKLRAWDGPFLCLSCTEKKEAMEGKRPSGDRHSSGSD 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31152031 31155426 + CcPI632755_05g022410.1 Cco05g2241 179869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2241 428 Gene3D - 32 301 IPR036457 -
Cco05g2241 428 Pfam Protein phosphatase 2C 54 278 IPR001932 -
Cco05g2241 428 PANTHER PROTEIN PHOSPHATASE 32 292 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco05g2241 428 SMART PP2C_4 26 291 IPR001932 -
Cco05g2241 428 SUPERFAMILY PP2C-like 38 293 IPR036457 -
Cco05g2241 428 FunFam probable protein phosphatase 2C 12 32 299 - -
Cco05g2241 428 SMART PP2C_SIG_2 46 293 IPR001932 -
Cco05g2241 428 CDD PP2Cc 39 293 IPR001932 -
Cco05g2241 428 ProSiteProfiles PPM-type phosphatase domain profile. 31 293 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2241 Cco-Chr5:31152031 Cco05g2519 Cco-Chr5:33507876 6.10E-144 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2241 - - - 0.0