Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2251 ATGGGTGAGATTTTTGTATCTGTTTTGGTGTTTTTTCTCACTCTATTATGGTACATTTCTTTAAAGAAAAACAAGAAGGAAGCCATTAAAAATGGAACTAAGCTCCCTCCTGGTTCTTTGGGATGGCCTTATATTGGAGAAACCCTTCAACTCTATTCTCAAGACCCTGAATCTTTCTTCGCCACCAAACAGAAAAGGTATGGGGAGATTTTCAAGACGCATATACTTGGATGTCCTTGTGTGATGTTGGCTAGTCCTGAGGCAGCAAGGTTTGTGCTAATGACACAGGCTCATTTGTTCAAGCCAACTTACCCCAAAAGCAAAGAACTTTTGATTGGCCCCTCTGCTCTGTTTTTTCACCAAGGTGACTACCATTGCCGTCTGAGGAAACTGGTTCAGAACTCTCTTTCTTTGGATGCCATCCGCACCTTAGTCCCCGATATCGACTCCGTCACCGCTTCCGCCCTTGACTCCTGGGCCAGTTCCGTACTCATTAGCACCTTTCATGAAATGAAAAAGATATCATTTGAAGTTGGGATATTGACCATTTTTGGCCATTTGGAAGCGACTTACAAAGAGGAGCTTAAAAACAACTATAGCATATTGGACGCAGGCTACAATTCTTTTCCCACCAACATTCCCGGAACTCCATACAAAAAGGCACTCTCAGCAAGAAAGCGGCTAAGTAAAATCCTAGGTGACATAATCCATGAGAGAAGAGAAAAAAGACTTGGGAAAAAGGATCTATTGGGAAGCCTTCTAAACTCCATTGATGATGAAGGTGAAGTTAAAATAAGCGATGCCCAAATAGCAGATAACATAATAGGAGTGCTTTTTGCAGCTCAAGACACCACTGCCAGTGTCATGACTTGGATTGTTAAGTACCTCCATGACCAACCTAAGCTTCTTCAATCCGTAAAGGAAGAGCAAGAGGAAATTAAAAAAATAAATTGTGAGAATAATCAAGAGTTGAACTGGGTTCAGACAAGAAACATGCCAATGAGTTACAAGGTGATATTGGAGAGCTTAAGGATGGCGAGCATTATATCGTTCACTTTTAGAGAGGCTGTAGCTGATGTGGAATACAAAGGATACTTGATTCCAAAAGGTTGGAAAGTGATGCCTTTGTTCAGAAACATCCATCATAGTCCAGAATATTTCCCCAATCCTCACAATTTCGACCCTTCTAGATTTGAGGTTGCACGAAAGCCCAATACATTTATGCCATTTGGCAGTGGAGTTCATGCCTGCCCAGGAAATGAACTTGCAAAGCTGGAGATGTTGATCATGATTCATCATCTAGTCACCAAGTTCAGGTGGGAATTGGTTGGTACGCAAAACAGGGTTCAACACAGTCCATTTCCCGTTCCCCTGCAAGGCCTTCCAGCCAGATTTTGGAAGATAGGCCATTAG 1413 42.25 MGEIFVSVLVFFLTLLWYISLKKNKKEAIKNGTKLPPGSLGWPYIGETLQLYSQDPESFFATKQKRYGEIFKTHILGCPCVMLASPEAARFVLMTQAHLFKPTYPKSKELLIGPSALFFHQGDYHCRLRKLVQNSLSLDAIRTLVPDIDSVTASALDSWASSVLISTFHEMKKISFEVGILTIFGHLEATYKEELKNNYSILDAGYNSFPTNIPGTPYKKALSARKRLSKILGDIIHERREKRLGKKDLLGSLLNSIDDEGEVKISDAQIADNIIGVLFAAQDTTASVMTWIVKYLHDQPKLLQSVKEEQEEIKKINCENNQELNWVQTRNMPMSYKVILESLRMASIISFTFREAVADVEYKGYLIPKGWKVMPLFRNIHHSPEYFPNPHNFDPSRFEVARKPNTFMPFGSGVHACPGNELAKLEMLIMIHHLVTKFRWELVGTQNRVQHSPFPVPLQGLPARFWKIGH 470
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 31238407 31241603 - CcPI632755_05g022510.1 Cco05g2251 179879
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2251 470 Gene3D Cytochrome P450 24 468 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2251 470 PRINTS P450 superfamily signature 280 297 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2251 470 PRINTS P450 superfamily signature 337 348 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2251 470 PRINTS P450 superfamily signature 417 428 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2251 470 PRINTS P450 superfamily signature 408 417 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2251 470 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 410 419 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco05g2251 470 SUPERFAMILY Cytochrome P450 33 466 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2251 470 PANTHER CYTOCHROME P450 26 34 445 - GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
Cco05g2251 470 PRINTS E-class P450 group I signature 376 400 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2251 470 PRINTS E-class P450 group I signature 417 440 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2251 470 PRINTS E-class P450 group I signature 336 354 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2251 470 PRINTS E-class P450 group I signature 289 315 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2251 470 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2251 470 PRINTS E-class P450 group I signature 269 286 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2251 470 PRINTS E-class P450 group I signature 407 417 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2251 470 FunFam Abscisic acid 8 25 467 - -
Cco05g2251 470 CDD CYP90-like 64 464 - -
Cco05g2251 470 Pfam Cytochrome P450 36 446 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2251 Cco-Chr5:31238407 Cco09g0966 Cco-Chr9:9113550 3.00E-75 dispersed
Cco02g0647 Cco-Chr2:6402125 Cco05g2251 Cco-Chr5:31238407 4.40E-183 transposed
Cco03g0136 Cco-Chr3:1319383 Cco05g2251 Cco-Chr5:31238407 2.70E-146 transposed
Cco07g1185 Cco-Chr7:25711183 Cco05g2251 Cco-Chr5:31238407 3.20E-159 transposed
Cco09g2432 Cco-Chr9:38544503 Cco05g2251 Cco-Chr5:31238407 1.50E-58 transposed
Cco05g2251 Cco-Chr5:31238407 Cco08g1779 Cco-Chr8:28899018 1.10E-186 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2251 K09843 - csv:101213916 863.988