Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2256 ATGGGTTCTGGCAACGAAGAATCCGAAGACGAAGCCGGAGTCTCTGCCATTAGGGCTCTCGGCTCTCTTTTTAAGTTGACCGAAGTCTTTCTCTGGGACGATGAGACAGAAGTAGCTAGACGAGTGGAAAGTAGTTTAGCTCTTGATGCTGATGATGCCAATAACGAGAAATTCGGGGAGAAAATCTGTACTACTATCAGTGGTATCATACCGGAGGATGTCGAACTTACAGAACAGATGAATGCTTTGGGGCTTCCTCTTTCGTTCCACACAAATAAAGAGCAGAAGAGAATTGGAATCACCATGGGTAAAAGAAAAGCTACTGTCAAGCATTCTAGAACCCAGCAAGGACTTCTAGACAAAGAATTGGAGTATCCCAATGCGAGCAGCAGGGTGGAGATTGTAGCTAACATTAATTTCAATGATGATGACGTAGGCTCTCTATCTTACTCGTCTATGGTGAACCAAAGTGAGACATCTGATCGTGATGTTGTGTTGGATGCCAATGAATCCCATGTCATCTCTGATGGAAATATATCACCTAATTCAAGTGGACTTGTAAGTGGTGCTGTTGAAGAACAATCTACCAGAGTTATGTGCAATTTTGTGCTTAATAATGGGGGAGACCATGAATTAAGCTCAGGTCTTGATATCGGCCATGGCAAGCAGGAGGAAGTTGAACCACCTATGGAGTCAGAAGGCTCGTCCACGACTTTACAAGATACTGAAGTGCAGAAGACCAACATTGATAGTGCCATTGGACTGCCCGTAGTAGCTGAATCATCTTTCCTTCATATGGAAGTGGACTATAACAAAGATGACCTTGTTGGATGTACTCATGAATCTGGAGAATGGATGGTGTATTGGGATTCTTTTTATATGAGAAACTACTTCTATAATATGAAGACACATGAGTCTACTTGGTTACCTCCCCCAGGGTTGGAACATTTTGCACTTTCTGATGCCAATTTCACAGAAAATGAACCAATTGCCGAAGTTGTCGAAATGAATGTATTAGAAGATGTACAATCAGAAGATATTTGTAGTGTGCTTGGCGATACCAGGTCATGTATGAATTTACTTGGTGATAATGTCCATTGTCAACCACCTGATGCACTGTTGGAGGGCTCTAGTATTTTAGCTGAGGGCTCCGAGAGTAGTGCATCTGTCAATACTTCGGTTAACAGTTATAAGCAATCTGACGAACCTCAAGAGTGGCAGATGAGTTGTAACAATATTGGGGAAAATATCAGATGCAGTTGTGAAGGTCATGTCAAGCAACCATGTAAAGATAACTGCAGCAATGGTTTCCAGCTCATTGTTGCAAACAGAGCTTCTGAACAAGAGACCTTCGTCCATCGCAAACCTAGTGACATGGACTCACCTGAGATAGATTGTGTCACCATAGATGATGATGAAGGTGCAGTGGGTTTAGCTACTAGCAGTGCTTCTCATATGCTTCAGCAGGCAGATCGAATGGGTGGTGATATGCGTTTTGGAAATGAACCTACCATATGTACACTGGGTACTGAGCAAAATCTTTCTGGAAGAAGTAGGAAAAAGAAAATGAAAAGAACACGTAGACGTGGACTACTATCTGATAGAAATGAAGAATTTCATTCTTCCGCAATCACTGAAGAGTATCCCACAAGTATTACTAAGTATTGGTGTCAGAGGTATCGACTTTTCTCCAGATTTGATGATGGTGTAAAAATGGACAAAGAAGGATGGTTTTCTGTAACTCCAGAGCCTATAGCTAGGCATCATGCATCACGTTGTGGTAGCAATATGATAATTGACTCTTTCACTGGTGTTGGTGGAAATGCCATCCAGTTTTCCCAAAGGGCCAAACATGTTATCGCAATTGATATTGATCCAATAAAGATTAGATATGCCCAACATAATGCAGCCATATATGGTGTTGAAGATCAAATAGATTTCATAAAGGGGGACTTCTTCCGTTTGGCTCCACATCTGAAGGCCGATGTTATATTCTTATCACCTCCTTGGGGAGGCCCTGATTATGCCAGAGTAGATATATATGACCTAAAGACCATGCTCAAACCACGTGATGGGTATTTTCTCTTCAACATTGCTAAGAAAATTGCTCCTGTCGTTGTCATGTTTCTTCCAAAGAATGTTAATCTTGACCAACTAGCGGAGCTGTCTCTTTCTTCAGATCCTCCGTGGTCACTTGAGGTAGAGAAAAACTTTTTAAATGGCAAGCTGAAGGCGATTACTGCTTACTTTAGCAATAGCTCTATGAACGAACACAATGTCACCTAA 2286 41.73 MGSGNEESEDEAGVSAIRALGSLFKLTEVFLWDDETEVARRVESSLALDADDANNEKFGEKICTTISGIIPEDVELTEQMNALGLPLSFHTNKEQKRIGITMGKRKATVKHSRTQQGLLDKELEYPNASSRVEIVANINFNDDDVGSLSYSSMVNQSETSDRDVVLDANESHVISDGNISPNSSGLVSGAVEEQSTRVMCNFVLNNGGDHELSSGLDIGHGKQEEVEPPMESEGSSTTLQDTEVQKTNIDSAIGLPVVAESSFLHMEVDYNKDDLVGCTHESGEWMVYWDSFYMRNYFYNMKTHESTWLPPPGLEHFALSDANFTENEPIAEVVEMNVLEDVQSEDICSVLGDTRSCMNLLGDNVHCQPPDALLEGSSILAEGSESSASVNTSVNSYKQSDEPQEWQMSCNNIGENIRCSCEGHVKQPCKDNCSNGFQLIVANRASEQETFVHRKPSDMDSPEIDCVTIDDDEGAVGLATSSASHMLQQADRMGGDMRFGNEPTICTLGTEQNLSGRSRKKKMKRTRRRGLLSDRNEEFHSSAITEEYPTSITKYWCQRYRLFSRFDDGVKMDKEGWFSVTPEPIARHHASRCGSNMIIDSFTGVGGNAIQFSQRAKHVIAIDIDPIKIRYAQHNAAIYGVEDQIDFIKGDFFRLAPHLKADVIFLSPPWGGPDYARVDIYDLKTMLKPRDGYFLFNIAKKIAPVVVMFLPKNVNLDQLAELSLSSDPPWSLEVEKNFLNGKLKAITAYFSNSSMNEHNVT 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31285739 31291342 + CcPI632755_05g022560.1 Cco05g2256 179884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2256 761 Pfam RNA cap guanine-N2 methyltransferase 596 752 IPR019012 GO:0001510(InterPro)|GO:0008168(InterPro)|GO:0036261(InterPro)
Cco05g2256 761 Gene3D - 277 331 - -
Cco05g2256 761 ProSiteProfiles WW/rsp5/WWP domain profile. 285 313 IPR001202 GO:0005515(InterPro)
Cco05g2256 761 PANTHER S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE RELATED 72 753 - GO:0005634(PANTHER)|GO:0036261(PANTHER)|GO:0071164(PANTHER)
Cco05g2256 761 SUPERFAMILY WW domain 279 312 IPR036020 GO:0005515(InterPro)
Cco05g2256 761 CDD AdoMet_MTases 598 696 - -
Cco05g2256 761 ProSitePatterns WW/rsp5/WWP domain signature. 285 311 IPR001202 GO:0005515(InterPro)
Cco05g2256 761 MobiDBLite consensus disorder prediction 219 240 - -
Cco05g2256 761 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 543 711 IPR029063 -
Cco05g2256 761 CDD WW 285 313 IPR001202 GO:0005515(InterPro)
Cco05g2256 761 Gene3D Vaccinia Virus protein VP39 545 758 IPR029063 -
Cco05g2256 761 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 547 754 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2256 K14292 - - csv:101215034 1207.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g757 Blo01g01527 . Bda01g00568 . Bpe02g00429 . . . . . . Cma09g00232 . . . Cpe06g00162 . . . . . . . . . . . . . . . . Cone7ag1371 . . Lsi04g01559 Csa04g02411 . . . . . . . . . . . . Cmo09g00224 . . . Car09g00201 . . Bhi09g03317 Tan01g4781 . . . . . Cla05g02043 Cam05g2193 Cec05g2211 Cco05g2256 Clacu05g2187 Cmu05g2053 Cre05g2182 . . Chy07g00135 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003746 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11 2 44