Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2262 | ATGGAAAATGATGATCTAAAATCGGAAGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCTGAATTTTACAATGATTTCTCACCGCCGTCCTCTGATTTCAGCTCAAGCAGCACCGATCACCCACATTGCCACCTGGACTCTTCCTCATCGCCTCCCTTATTCATCAACAACCCACCTTATAATAATTTCCCACAATCTACTGTTTCATTCCCGGCCACCACTTCACGGTGGCGAAACTCCGGTGGTGAAACAGAGAGTTTGCAGAAACAGAGGTCAGTGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATTCACATAGACCCAGAAGCGGTGAAGCCACCAAAAAGAAGGAACGTCAAGATTTCAACTGACCCACAAAGCGTAGCGGCTCGGCATAGGAGAGAGAGAATTAGTGAGAGAATTAGAATACTTCAAAGACTGGTCCCTGGAGGTACTAAAATGGACACTGCTTCTATGTTGGATGAAGCTATTCATTATGTTAAATTCTTAAAGACCCAAGTTCAGTCACTTGAAAGAGCCGCCGCCGCCGGCGGGAACCGCCCAATCACTGGTGCTGCTGCTAGCGTCGGGTTCCCTTTGGAAATGTCAACTGGGAGCTACATCCCCAATCACTCACAACCTTGA | 675 | 46.67 | MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSSPPLFINNPPYNNFPQSTVSFPATTSRWRNSGGETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAAAGGNRPITGAAASVGFPLEMSTGSYIPNHSQP | 224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 31350406 | 31351080 | - | CcPI632755_05g022620.1 | Cco05g2262 | 179890 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2262 | 224 | FunFam | BHLH transcription factor | 134 | 197 | - | - | |
Cco05g2262 | 224 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 131 | 180 | IPR011598 | GO:0046983(InterPro) | |
Cco05g2262 | 224 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 136 | 190 | IPR036638 | GO:0046983(InterPro) | |
Cco05g2262 | 224 | CDD | bHLH_AtIND_like | 132 | 188 | - | - | |
Cco05g2262 | 224 | MobiDBLite | consensus disorder prediction | 32 | 53 | - | - | |
Cco05g2262 | 224 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 26 | 201 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2262 | 224 | SMART | finulus | 137 | 186 | IPR011598 | GO:0046983(InterPro) | |
Cco05g2262 | 224 | Gene3D | - | 134 | 196 | IPR036638 | GO:0046983(InterPro) | |
Cco05g2262 | 224 | MobiDBLite | consensus disorder prediction | 28 | 53 | - | - | |
Cco05g2262 | 224 | Pfam | Helix-loop-helix DNA-binding domain | 140 | 181 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1305 | Cco-Chr4:28325894 | Cco05g2262 | Cco-Chr5:31350406 | 2.30E-33 | dispersed | |
Cco05g2262 | Cco-Chr5:31350406 | Cco09g0037 | Cco-Chr9:340734 | 2.40E-30 | dispersed | |
Cco02g1369 | Cco-Chr2:25832563 | Cco05g2262 | Cco-Chr5:31350406 | 7.80E-41 | transposed | |
Cco04g0870 | Cco-Chr4:24273407 | Cco05g2262 | Cco-Chr5:31350406 | 2.20E-21 | transposed | |
Cco04g1449 | Cco-Chr4:29903922 | Cco05g2262 | Cco-Chr5:31350406 | 5.70E-08 | wgd | |
Cco05g2262 | Cco-Chr5:31350406 | Cco08g1786 | Cco-Chr8:28991233 | 5.80E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59351 | PF00010 | HLH | 1.40E-06 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2262 | - | - | - | 0.0 |