Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2262 ATGGAAAATGATGATCTAAAATCGGAAGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCTGAATTTTACAATGATTTCTCACCGCCGTCCTCTGATTTCAGCTCAAGCAGCACCGATCACCCACATTGCCACCTGGACTCTTCCTCATCGCCTCCCTTATTCATCAACAACCCACCTTATAATAATTTCCCACAATCTACTGTTTCATTCCCGGCCACCACTTCACGGTGGCGAAACTCCGGTGGTGAAACAGAGAGTTTGCAGAAACAGAGGTCAGTGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATTCACATAGACCCAGAAGCGGTGAAGCCACCAAAAAGAAGGAACGTCAAGATTTCAACTGACCCACAAAGCGTAGCGGCTCGGCATAGGAGAGAGAGAATTAGTGAGAGAATTAGAATACTTCAAAGACTGGTCCCTGGAGGTACTAAAATGGACACTGCTTCTATGTTGGATGAAGCTATTCATTATGTTAAATTCTTAAAGACCCAAGTTCAGTCACTTGAAAGAGCCGCCGCCGCCGGCGGGAACCGCCCAATCACTGGTGCTGCTGCTAGCGTCGGGTTCCCTTTGGAAATGTCAACTGGGAGCTACATCCCCAATCACTCACAACCTTGA 675 46.67 MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSSPPLFINNPPYNNFPQSTVSFPATTSRWRNSGGETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAAAGGNRPITGAAASVGFPLEMSTGSYIPNHSQP 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31350406 31351080 - CcPI632755_05g022620.1 Cco05g2262 179890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2262 224 FunFam BHLH transcription factor 134 197 - -
Cco05g2262 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983(InterPro)
Cco05g2262 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 190 IPR036638 GO:0046983(InterPro)
Cco05g2262 224 CDD bHLH_AtIND_like 132 188 - -
Cco05g2262 224 MobiDBLite consensus disorder prediction 32 53 - -
Cco05g2262 224 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 26 201 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2262 224 SMART finulus 137 186 IPR011598 GO:0046983(InterPro)
Cco05g2262 224 Gene3D - 134 196 IPR036638 GO:0046983(InterPro)
Cco05g2262 224 MobiDBLite consensus disorder prediction 28 53 - -
Cco05g2262 224 Pfam Helix-loop-helix DNA-binding domain 140 181 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1305 Cco-Chr4:28325894 Cco05g2262 Cco-Chr5:31350406 2.30E-33 dispersed
Cco05g2262 Cco-Chr5:31350406 Cco09g0037 Cco-Chr9:340734 2.40E-30 dispersed
Cco02g1369 Cco-Chr2:25832563 Cco05g2262 Cco-Chr5:31350406 7.80E-41 transposed
Cco04g0870 Cco-Chr4:24273407 Cco05g2262 Cco-Chr5:31350406 2.20E-21 transposed
Cco04g1449 Cco-Chr4:29903922 Cco05g2262 Cco-Chr5:31350406 5.70E-08 wgd
Cco05g2262 Cco-Chr5:31350406 Cco08g1786 Cco-Chr8:28991233 5.80E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59351 PF00010 HLH 1.40E-06 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2262 - - - 0.0