Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2274 ATGGAAGGACAAGTTTGCTCTGCTGTAAATTCATCACCCAAGAGGAAGCAAAAGCATCAGACTCATCTCCAACAAGAAAAGCCTTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCCGAAATCAGAGAACCCAACAAACGCTCCAGGATTTGGCTTGGTTCATACACAACCCCTGTCGCCGCCGCTAGAGCTTACGACACCGCCGTCTTCTATCTCCGAGGCCCCACCGCCCGCCTTAACTTCCCCGAGTTGATGTTCGAAGCAGACCAGCTTCACGACATGTCGGCCGCCTCCATACGGAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAAACCTCCCTCCTCGCCTCTAACTCAAACTCCAATTCCGCTACTCAAATTCCCGACAAGCCCGATTTAAACGAGTACCCCAACCCTGAAACCTCCGACGACGATTAA 456 53.07 MEGQVCSAVNSSPKRKQKHQTHLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELMFEADQLHDMSAASIRKRATEVGARVDAIQTSLLASNSNSNSATQIPDKPDLNEYPNPETSDDD 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31455193 31455648 - CcPI632755_05g022740.1 Cco05g2274 179902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2274 151 CDD AP2 29 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2274 151 MobiDBLite consensus disorder prediction 1 26 - -
Cco05g2274 151 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2274 151 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2274 151 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2274 151 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Cco05g2274 151 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2274 151 Pfam AP2 domain 29 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2274 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 150 - -
Cco05g2274 151 SMART rav1_2 28 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2274 151 MobiDBLite consensus disorder prediction 121 151 - -
Cco05g2274 151 MobiDBLite consensus disorder prediction 121 135 - -
Cco05g2274 151 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1323 Cco-Chr2:25032317 Cco05g2274 Cco-Chr5:31455193 7.30E-39 dispersed
Cco05g2274 Cco-Chr5:31455193 Cco08g0160 Cco-Chr8:2582201 1.10E-20 dispersed
Cco04g1453 Cco-Chr4:29969044 Cco05g2274 Cco-Chr5:31455193 4.80E-39 wgd
Cco05g2274 Cco-Chr5:31455193 Cco08g1797 Cco-Chr8:29091200 1.90E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59354 PF00847 AP2 2.20E-11 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2274 K09286 - csv:101219005 269.24