Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2274 | ATGGAAGGACAAGTTTGCTCTGCTGTAAATTCATCACCCAAGAGGAAGCAAAAGCATCAGACTCATCTCCAACAAGAAAAGCCTTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCCGAAATCAGAGAACCCAACAAACGCTCCAGGATTTGGCTTGGTTCATACACAACCCCTGTCGCCGCCGCTAGAGCTTACGACACCGCCGTCTTCTATCTCCGAGGCCCCACCGCCCGCCTTAACTTCCCCGAGTTGATGTTCGAAGCAGACCAGCTTCACGACATGTCGGCCGCCTCCATACGGAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAAACCTCCCTCCTCGCCTCTAACTCAAACTCCAATTCCGCTACTCAAATTCCCGACAAGCCCGATTTAAACGAGTACCCCAACCCTGAAACCTCCGACGACGATTAA | 456 | 53.07 | MEGQVCSAVNSSPKRKQKHQTHLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELMFEADQLHDMSAASIRKRATEVGARVDAIQTSLLASNSNSNSATQIPDKPDLNEYPNPETSDDD | 151 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 31455193 | 31455648 | - | CcPI632755_05g022740.1 | Cco05g2274 | 179902 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2274 | 151 | CDD | AP2 | 29 | 87 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2274 | 151 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cco05g2274 | 151 | ProSiteProfiles | AP2/ERF domain profile. | 28 | 85 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2274 | 151 | PRINTS | Ethylene responsive element binding protein signature | 29 | 40 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2274 | 151 | PRINTS | Ethylene responsive element binding protein signature | 67 | 87 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2274 | 151 | FunFam | Ethylene-responsive transcription factor 2 | 27 | 86 | - | - | |
Cco05g2274 | 151 | Gene3D | AP2/ERF domain | 27 | 87 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2274 | 151 | Pfam | AP2 domain | 29 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2274 | 151 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 12 | 150 | - | - | |
Cco05g2274 | 151 | SMART | rav1_2 | 28 | 91 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2274 | 151 | MobiDBLite | consensus disorder prediction | 121 | 151 | - | - | |
Cco05g2274 | 151 | MobiDBLite | consensus disorder prediction | 121 | 135 | - | - | |
Cco05g2274 | 151 | SUPERFAMILY | DNA-binding domain | 28 | 86 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1323 | Cco-Chr2:25032317 | Cco05g2274 | Cco-Chr5:31455193 | 7.30E-39 | dispersed | |
Cco05g2274 | Cco-Chr5:31455193 | Cco08g0160 | Cco-Chr8:2582201 | 1.10E-20 | dispersed | |
Cco04g1453 | Cco-Chr4:29969044 | Cco05g2274 | Cco-Chr5:31455193 | 4.80E-39 | wgd | |
Cco05g2274 | Cco-Chr5:31455193 | Cco08g1797 | Cco-Chr8:29091200 | 1.90E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59354 | PF00847 | AP2 | 2.20E-11 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2274 | K09286 | - | csv:101219005 | 269.24 |