Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2275 ATGAATAACAGGAATTTCGTCTGTAATCCTATGGTTGCTCTTCCATTATTACCTTCCTCTCACTTGCTGTTTTCGAATAGCGCCATTGATTTCAGGCACAGGGTCTCCATTGTTGTAAAACCCACTTTCCAGGGTTCGCGTAGATGGCGAATCCGAGCCACCGCCGAGAACGGAGCTTCATCTGCGTCGACTTCCCAGATCGACATGGTGAGGAACAGGGAGGGGGTTTTTACCGCCAAACAAAGCAAGGTTGTCGTGCTTTGGGATCTTGATAACAAACCCCCTCGTGGGCCGCCGTACGAGGCGGCTATGGCGCTGAAACGAGTAGCGCAACGCTTCGGACAAGTCGTCGACATGTCGGCTTACGCCAATCGCCACGCCTTTATCCATTTGCCGCAATGGGTTGTTGAAGAACGCCGCGAGCGTCGGCAATTCGATATTCTTGAGCGTAAAGGGTTGTTCACGCCGTCCGAATCGTACGTCTGCGGGGTTTGCGGTCGCAAGTGCAAAACAAACCTAGACCTTAAGAAGCATTTCAAGCAACTTCACGAACGCGAGCGCCAGAAGAAATTGCACAGAATGAGGTCTCTCAAGGGCAAAAAGCGACAGCGTTATAAGGAAAGGTTCATATCTGGAAACCATAAGTACAATGAAGCGGCAAGGTCTCTGATTACTCCCAAAGTTGGATATGGATTGGCCTCAGAATTGAGACGTGCTGGGGTTTTTGTGAAGACTGTAGAGGATAAGCCTCAGGCAGCTGATTGGGCTTTGAAGAGGCAGATGCAACACTCGATGAGTCGTGGTATTGATTGGATGATTCTTATTTCCGATGATTCGGATTTCTCAGAGATGTTAAGGAAGGCTAAGGAAGCTAATTTGGGAACTGTGGTGGTGGGAGATCGTGATAGGGCATTGGGTAGGCACGCAGATTTATGGGTTCCATGGATGGGTGTTGAAAATGGGGATATTACAGTGGAGGATTTGGTGCCCAAAAGATGGAGGATGAGAAGAAGAGACGAGGAAATGGATGGAGATGATGATGGTTTTTCAGTTTCTCGTTTCTATGGAGACGCTGAAGCTGGTGATTTGGAGAGTGTAGTGGAAGAGCTTGTTTCCGCAAGTACAGAAGAGTTCAATGGCTTTAGAATTTCTGCATTTTCAGAGGGGGAAGATGAAGATGATTGGGTTGAAGAAGATGTGGGATCTGACTATCTGCTAGGGATGAGTGACGAGGAAGATGGGCATTCCTGA 1251 48.28 MNNRNFVCNPMVALPLLPSSHLLFSNSAIDFRHRVSIVVKPTFQGSRRWRIRATAENGASSASTSQIDMVRNREGVFTAKQSKVVVLWDLDNKPPRGPPYEAAMALKRVAQRFGQVVDMSAYANRHAFIHLPQWVVEERRERRQFDILERKGLFTPSESYVCGVCGRKCKTNLDLKKHFKQLHERERQKKLHRMRSLKGKKRQRYKERFISGNHKYNEAARSLITPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWMILISDDSDFSEMLRKAKEANLGTVVVGDRDRALGRHADLWVPWMGVENGDITVEDLVPKRWRMRRRDEEMDGDDDGFSVSRFYGDAEAGDLESVVEELVSASTEEFNGFRISAFSEGEDEDDWVEEDVGSDYLLGMSDEEDGHS 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31465470 31466720 - CcPI632755_05g022750.1 Cco05g2275 179903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2275 416 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 188 IPR013087 -
Cco05g2275 416 Gene3D - 77 316 - -
Cco05g2275 416 MobiDBLite consensus disorder prediction 388 416 - -
Cco05g2275 416 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 52 395 - -
Cco05g2275 416 MobiDBLite consensus disorder prediction 390 406 - -
Cco05g2275 416 CDD PIN_LabA-like 170 300 - -
Cco05g2275 416 ProSitePatterns Zinc finger C2H2 type domain signature. 162 183 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2275 Cco-Chr5:31465470 Cco10g0310 Cco-Chr10:3636416 1.10E-57 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59355 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2275 - - - 0.0