Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2276 ATGGCCGGATCCTCCGCTGTTGCTGCAGCTGCCGTGTCTATTGCAGTCCTTGCATTGTTACTCACCGGATTTTATTTTTGGAGGCGGCGGCGGCGGGGTCTTATTGAATCACCAACTATTGAGAAGTTACAGAGTGTGGAAAATTCTCAACAGCGATCAGGTTCTGGGACTCTGAAGCTTCATTACCAATCTGAATCGGAGGGCAAAAGGCGACTCAGTAATTTTCACCCTCGTGGGGTTCCTCAAAAGGCTTTGTTCAGTTGGGACGACAGCCCTTCGCTCGTTAACGACGCCGTCGAAAATGGATGGACCCAATTTGCTTTTACCAGTAACATGTCATCTTCTCCAACTTCAAGATCCCGATTGTTGGGTTTATGTACGGCCGGAGAGATCGAGAAGGAGATACCCGAGACGGAGATTAGCTGGGAAGTGAGTCAAGGATCGGCCGATTTTATGCAAAAGATTAGGCTTAATTCTGGGTTTAAGAAGACAATTAACAATACAATCTCTTCTTATCCTTATCCCTCTGCTTCCTCTGTAATTAAAACTGCTCTGCCATTACCGGGTCCTCCCTTGGCATCCTTCCCACAAGAAGCGTATTTTGAGATCACGATTCTGGATATTTCCGGCCATGAAAAGGAATCCACCGGAGTGGCGAAAGAAGGGGAGAGAATCAAACTGATACCCGAGAATCATAGCTCGAAGGCGAGCTCAGAGTCTCTGGCCTATTTTACATCGAATAACAAAGTTAGCAACGTTGAGGAATCGAAGCTCAATGGGAAAGGAGAAGAAGATGAAGTAGTTGAAGATGTGATGCTATCCATTGGGCTCATTTCCGGCGGCTTCCCCCCTTCGAAACTTCCCGGCAGCTACTCCGGTAGCATCGGATTCAACTCCAATGGCTCAGTCTATCTCGATGGAATAAAATTAGTGTTTGAGTCTGAAAGAGCAGAGTGGGGAAGGCCCGAGAAGGTAATCGGATGTGGGTTTGATCCAAAACAGAAGAAGGTGTTCTTCACGGTGGATTCAGAATTGGTGCACGTGATCAATTGCAAGTCAGAGGAATTTGGAAGCCCATTGTATCCGACTCTGGCGGCCAACGCTGACGTTACAGTTTTAGTAAATTTGGGGCAAGGCGTATTCAAGTACATACCAGCGCAAAGAACTCCAAATCCATGCTTTGTAAGTCCCCTTGTGAATGCCGGCGGTGGTTTCCATGGCAATGAGTACGAAGATAGCAGAGAGCTTTTCTCAATGGGAATGATCGATTCTCAGTGGTTTAGTCAGCTGACTCCGAAACCCAGCAACAATCTTGTTGTTGATCAACGAAAGGACGATGAGTTGTCCAATGACATGGAAATTTGCGATGAAATTGAACTTTTTGAGATTGTGGTGGAAGATGAGCAACGGATCTCAAGTAAAACGTAA 1428 46.43 MAGSSAVAAAAVSIAVLALLLTGFYFWRRRRRGLIESPTIEKLQSVENSQQRSGSGTLKLHYQSESEGKRRLSNFHPRGVPQKALFSWDDSPSLVNDAVENGWTQFAFTSNMSSSPTSRSRLLGLCTAGEIEKEIPETEISWEVSQGSADFMQKIRLNSGFKKTINNTISSYPYPSASSVIKTALPLPGPPLASFPQEAYFEITILDISGHEKESTGVAKEGERIKLIPENHSSKASSESLAYFTSNNKVSNVEESKLNGKGEEDEVVEDVMLSIGLISGGFPPSKLPGSYSGSIGFNSNGSVYLDGIKLVFESERAEWGRPEKVIGCGFDPKQKKVFFTVDSELVHVINCKSEEFGSPLYPTLAANADVTVLVNLGQGVFKYIPAQRTPNPCFVSPLVNAGGGFHGNEYEDSRELFSMGMIDSQWFSQLTPKPSNNLVVDQRKDDELSNDMEICDEIELFEIVVEDEQRISSKT 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31469341 31471074 + CcPI632755_05g022760.1 Cco05g2276 179904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2276 475 Gene3D - 162 389 IPR043136 -
Cco05g2276 475 Pfam SPRY domain 273 378 IPR003877 GO:0005515(InterPro)
Cco05g2276 475 PANTHER RAN BINDING PROTEIN 9-RELATED 115 408 IPR050618 -
Cco05g2276 475 CDD SPRY_RanBP_like 269 377 IPR044736 -
Cco05g2276 475 ProSiteProfiles B30.2/SPRY domain profile. 183 381 IPR001870 -
Cco05g2276 475 SUPERFAMILY Concanavalin A-like lectins/glucanases 283 383 IPR013320 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2276 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g734 Blo01g01520 Blo12g00964 . Bda03g00203 Bpe02g00437 Bpe04g00174 Bma04g00156 Bma01g02266 . . Cma01g01825 Cma09g00248 Car01g01426 . . Cpe06g00171 . . . . . . . . . . . . . . . . Cone7ag1358 Cone17ag0856 Cone20ag0202 Lsi04g01532 . . . . . . . . . . . Sed13g1771 Cmo01g01881 Cmo09g00242 . . . Car09g00207 . Cpe02g00190 Bhi09g03298 Tan01g4748 Cmetu07g1190 . Hepe01g1787 Mch11g0319 . Cla05g02063 Cam05g2216 Cec05g2234 Cco05g2276 Clacu05g2209 Cmu05g2075 Cre05g2201 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006499 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 38