Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2277 ATGGAAGCTGGGGAGGATTGTTGCGTCAAGGTCGCCGTCCACATCCGTCCGCTCATCGGCGATGAGCGCCTCCAAGGCTGTAAGGATTGCGTCACCGTTATCTCCGGGAAGCCTCAGGTACAAATTGGATCCCATTCATTTACGTTCGATCATGTCTATGGAAGCACTGGCTCACCCTCATCTTCGATGTTTGAAGAATGTGTTTCTCCGCTTGTAGATGGTCTGTTCCAAGGCTATAATGCTACCGTTCTAGCGTATGGGCAGACTGGATCTGGGAAAACTTATACAATGGGGACAGGTTTTAAGGATGGTGGTCAGACAGGAATTATACCTCAAGTCATGAATGTCTTGTTCAGCAAGATTGAAACTCTAAAGGATCAAATGGAATTTCAATTACATGTTTCTTTTATTGAGATTCTCAAGGAAGAGGTACGAGATCTGCTAGATTCTACTTCTTTTAGCAAAGTGGAGGGTACAAATGGACATGCAGGGAAAGTAACTCTACCTGGGAAACCACCTATACAAATTCGTGAATCGTCAAATGGCGTCATCACTCTAGCAGGATCTACAGAAGTTAGTGTAAACACACTGAAAGAAATGGCTTCTTGTCTTGAGCAAGGATCACTGAGTAGGGCTACAGGAAGTACGAATATGAATAATCAGTCAAGTCGTTCGCATGCCATCTTCACCATCACATTAGAGCAAATGCGTAAACTAAATCCAGCTTTTCCTGGAGAAGGCAATATTGACAACATAAGCGAAGAGTATTTGTGCGCAAAGTTGCACTTGGTAGATCTAGCTGGATCTGAACGAGCCAAGAGAACTGGTTCTGATGGTTTACGTTTCAAGGAAGGAGTTCATATAAACAAGGGTCTTCTTGCACTTGGTAATGTCATCAGCGCCCTTGGTGATGAGAAGAAGCGCAAAGAAGGAGTTCATGTCCCATATAGGGACAGTAAATTGACTCGACTCTTACAGGATTCTCTGGGTGGTAACAGCAGAACTGTTATGATAGCCTGCATCAGCCCCGCTGATATTAATGCCGAGGAAACCCTCAACACTTTGAAATATGCGAACCGAGCTCGAAATATCCAGAATAAGCCAGTTGTCAACAGGGATCCCATGTCCAATGAGATGTTAAAGATGCGACAACAACTAGAATATCTGCAGGCAGAACTTTTTGCTCGTGGAGGGTCTTCATCTGACGAAATTCAGGTTCTCAAGGAACGGATTGCCTGGCTTGAAGCAGCCAATCAGGATCTCTGCCGTGAGCTTCATGAATACCGTAGTCGATGTGGCATTGTGGAGCAATGTGAAACAGATGCCCAAGTCTGTGCCCAGGATGGTATAAATTGCTCTGACAAAACTGATGGGCTTATAAATTGCTCAGTCAAAAGTGATGGGCTCAAAAGGGGCTTGCAAAGTATTGAATCGCCTGATTTTCAAATGGGTGAAACCATGTCGGGTGAGTCGCGTGAAATCGATGAAGAAGTGGCAAAAGAATGGGAGCATACACTTTTGCAGAATAGCATGGACAAGGAATTGCATGAACTAAATAAACGTCTAGAGCAAAAGGAGTCCGAAATGAAACTTTTTGGAGGATTTGACACAGCAGCTCTCAAGCAGCATTTTGGGAAGAAAATTGTGGAACTGGAAGATGAGAAAAGAGCTGTCCAGCAAGAGAGGGATCGCTTGTTAGCTGAAGTTGAAAACCTGGCTGCTTGTTCTGATGGCCAAACACAGAAAATGCATGACATACATTCCCAAAAACTCAAAACACTTGAGGCTCAGATTCTAGAACTCAAGAAGAAACAGGAAAACCAGGTTCAACTCCTAAAGCAAAAACAAAAAAGTGATGAAGCTGCGAAAAAATTGCAGGACGAGATTCAATTCATAAAGGCTCAGAAGGTTCAATTACAACAAAGGATGAAACAGGAGGCAGAACAATTTCGACAGTGGAAAGCATCTCGTGAGAAAGAGCTCCTTCAGCTAAGAAAGGAGGGCAGGAGAAATGAATATGAAAGGCACAAACTGCAGGCTCTAAATCAGCGGCAGAAAATGGTTCTTCAAAGAAAAACAGAGGAAGCTGCAATGGCCACCAAGAGGCTGAAAGAACTACTAGAAGCTCGGAAATCTAATGGTCGTGAAAATTCAGGCATTACAAACGGAAATGGAATGAATGGGCAGAGCAATGAGAAATCCCTACAACGCTGGCTTGACCATGAATTGGAAGTGATGGTGAACGTGCATGAAGTTCGTTTTGAATATGAAAAACAAAGCCAAGTGCGAGCTGCACTTGCAGAAGAGTTATCCATGCTGAGACAAGTGGATGAGTTTGCTTCAAAGGGCCTCAGCCCTCCAAGAGGGAAAAATGGTTTCGCTAGAGTGTCCTCTATGTCACCAACCGCAAGAATGGCCAGAATAACATCACTTGAAAACATGCTAAGCATATCCTCAAATTCCCTTGTAGCAATGGCTTCACAACTTTCAGAGGCAGAGGAACGAGAGCGTGCCTTCACCAACCGCGGACGTTGGAACCAGTTGCGCTCCATGGGAGATGCTAAGAATTTGCTTCAATACATGTTCAATTCTCTTGCAGATGCACGATGCCACTTATGGGAAAAGGAACTAGAAACTAGGGAAATGAAAGAGCAACTGAAAGAACTTGTGGGACTGTTGAGGCAGAGTGAGACACGGAGAAAGGAGGTAGAGAAAGAGCTAAAATTGAGAGAGAAGGCTGTTGCGATTGCATTAGCTTCATCTGCACCGGTCCATCGTGAGCCTGAGAGTACACCACCATCATTGAAACACTTTGCTGATGAATTGAGTGGTCCTTTGTCTCCAATGTCAATACCAGCCCCGAAGCAACTCAAGTATACAGCAGGAATTGCCAATGGCTCTGCTAGGGTTTCTGCTGCAACCCTAGATCAAACACGAAAGATGGTACCAATAGGAAACTTATCAATGAAGAAGTTAGCAACTGTAGGACAAGCTGGAAAACTATGGAGATGGAAGAGAAGTCATCACCAATGGCTCTTACAGTTTAAATGGAAGTGGCAGAAACCATGGAGACTTTCGGAATGGATCAGACATAGTGATGAAACAATAATGAGATCAAGGCCTCGACCACATGCTCTGCCTGCTGGAATGTGA 3153 44.24 MEAGEDCCVKVAVHIRPLIGDERLQGCKDCVTVISGKPQVQIGSHSFTFDHVYGSTGSPSSSMFEECVSPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGGQTGIIPQVMNVLFSKIETLKDQMEFQLHVSFIEILKEEVRDLLDSTSFSKVEGTNGHAGKVTLPGKPPIQIRESSNGVITLAGSTEVSVNTLKEMASCLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLNPAFPGEGNIDNISEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPMSNEMLKMRQQLEYLQAELFARGGSSSDEIQVLKERIAWLEAANQDLCRELHEYRSRCGIVEQCETDAQVCAQDGINCSDKTDGLINCSVKSDGLKRGLQSIESPDFQMGETMSGESREIDEEVAKEWEHTLLQNSMDKELHELNKRLEQKESEMKLFGGFDTAALKQHFGKKIVELEDEKRAVQQERDRLLAEVENLAACSDGQTQKMHDIHSQKLKTLEAQILELKKKQENQVQLLKQKQKSDEAAKKLQDEIQFIKAQKVQLQQRMKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEARKSNGRENSGITNGNGMNGQSNEKSLQRWLDHELEVMVNVHEVRFEYEKQSQVRAALAEELSMLRQVDEFASKGLSPPRGKNGFARVSSMSPTARMARITSLENMLSISSNSLVAMASQLSEAEERERAFTNRGRWNQLRSMGDAKNLLQYMFNSLADARCHLWEKELETREMKEQLKELVGLLRQSETRRKEVEKELKLREKAVAIALASSAPVHREPESTPPSLKHFADELSGPLSPMSIPAPKQLKYTAGIANGSARVSAATLDQTRKMVPIGNLSMKKLATVGQAGKLWRWKRSHHQWLLQFKWKWQKPWRLSEWIRHSDETIMRSRPRPHALPAGM 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31485994 31495081 + CcPI632755_05g022770.1 Cco05g2277 179905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2277 1050 Gene3D Kinesin motor domain 2 392 IPR036961 -
Cco05g2277 1050 Coils Coil 404 424 - -
Cco05g2277 1050 Coils Coil 886 913 - -
Cco05g2277 1050 CDD KISc_KIF4 7 365 - -
Cco05g2277 1050 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco05g2277 1050 PRINTS Kinesin heavy chain signature 216 233 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco05g2277 1050 PRINTS Kinesin heavy chain signature 314 335 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco05g2277 1050 PRINTS Kinesin heavy chain signature 260 278 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco05g2277 1050 SMART kinesin_4 6 372 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco05g2277 1050 Coils Coil 584 656 - -
Cco05g2277 1050 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 957 1043 IPR027640 GO:0003777(PANTHER)|GO:0003777(InterPro)|GO:0005875(PANTHER)|GO:0007018(InterPro)|GO:0007052(PANTHER)|GO:0051231(PANTHER)
Cco05g2277 1050 Coils Coil 508 528 - -
Cco05g2277 1050 ProSitePatterns Kinesin motor domain signature. 259 270 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cco05g2277 1050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 395 IPR027417 -
Cco05g2277 1050 ProSiteProfiles Kinesin motor domain profile. 8 364 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco05g2277 1050 Coils Coil 541 568 - -
Cco05g2277 1050 FunFam kinesin-like protein KIN-4A isoform X1 2 392 - -
Cco05g2277 1050 Pfam Kinesin motor domain 16 364 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco05g2277 1050 Coils Coil 689 709 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2277 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2277 Cco-Chr5:31485994 Cco10g1871 Cco-Chr10:32307492 3.00E-59 dispersed
Cco05g2277 Cco-Chr5:31485994 Cco11g1505 Cco-Chr11:27867288 6.30E-259 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g731 Blo01g01519 . Bda01g00576 . Bpe02g00438 . . Bma01g02265 . . Cma01g01823 Cma09g00251 Car01g01425 . . Cpe06g00172 . . . . . . . . . . . . . . . Cone4ag1592 . . . Lsi04g01531 . . . Blo17g00895 . . . . . . . . Cmo01g01880 Cmo09g00243 . . . Car09g00208 . Cpe02g00191 Bhi09g03295 . . . . Mch11g0322 . Cla05g02066 Cam05g2217 Cec05g2236 Cco05g2277 Clacu05g2210 Cmu05g2076 Cre05g2202 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005992 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 0 2 2 38