Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2281 | ATGCTCCTTCTTAACAATAACATGGCTGTGGAGCTCATGGTGGGTTTTGGGGATGCTACTACTCCTACTAATTTCACGCCCAAGATGGAAGAAAATGCCGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAAAGCGTCCAGAATTTCCTACGTTTGATGTCCCATACTCCTAATCACCAACACTCCCAAGACGATTCTTCTGCTTCCATTACTCCTAATGCTATCGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAATAAATTCAAGAAGGTCATTTCTTTGCTCGACCGAAACAGAACCGGCCACGCACGTTTCAGAAGGGCTCCGGTTCTTACTACTACACCGCCCCCTCCTCCTCCGCCCAAGGTCAAGCCGCAGCATCAAGATCCGAGTTCGTCGTCTCCGATTTCAGTCCCTCATATTCAAGTAAAGAAACAAGAATCAGTGTCTGCTTTTAAGGTTTATTGCCCCACGCCCTCCCCTGTTGTGCGTTTGCCTCCTCTGCCTCACAACAACTCCCATCAGCCTTCACATCCACCCAATACCTTCCAAGCACAGCAAAATACTTCGTCGGTGGTACTCAAAAATGGGTCTGTAGATAGAAAAGATGCGACTACCACCATCAATTTTGCAGCCTCACCCCCGATTTCCGCTGCAAATTCGTATATTTCATCATTAACCGGAGACACCGAAAGCTTACAGCCATCTCTGTCATCTGGGTTCCAGTTCACCCACATGTCCCAGGTCTCTTCCGCAGGAAAGCCCCCTCTTTCATCTTCTTCGCTAAAGAGAAAATGCAATTCCATGGAGGATTCCGCCATGAAGTGTGGCTCGTCTTCCGGCCGGTGTCACTGTTCCAAGAAGAGCAGGAAAAACAGGATAAAAAGAGTCATCAGAGTTCCCGCCGTTAGCTCAAAACTTGCCGATATCCCACCAGACGATTACTCCTGGAGAAAGTACGGTCAAAAACCCATCAAAGGATCTCCTCATCCAAGGGGATATTACAAATGTAGCAGTCTGAGAGGCTGCCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAGCGCTTGTTCTCGAATCATCATAA | 1167 | 48.59 | MLLLNNNMAVELMVGFGDATTPTNFTPKMEENAAVSAVQEAASAGIQSVQNFLRLMSHTPNHQHSQDDSSASITPNAIAGYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPVLTTTPPPPPPPKVKPQHQDPSSSSPISVPHIQVKKQESVSAFKVYCPTPSPVVRLPPLPHNNSHQPSHPPNTFQAQQNTSSVVLKNGSVDRKDATTTINFAASPPISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCNSMEDSAMKCGSSSGRCHCSKKSRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPAALVLESS | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 31505655 | 31507246 | - | CcPI632755_05g022810.1 | Cco05g2281 | 179909 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2281 | 388 | Gene3D | WRKY domain | 302 | 376 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g2281 | 388 | SMART | WRKY_cls | 315 | 375 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g2281 | 388 | MobiDBLite | consensus disorder prediction | 107 | 142 | - | - | |
Cco05g2281 | 388 | SUPERFAMILY | WRKY DNA-binding domain | 313 | 374 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g2281 | 388 | ProSiteProfiles | WRKY domain profile. | 310 | 376 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g2281 | 388 | Pfam | WRKY DNA -binding domain | 317 | 373 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g2281 | 388 | MobiDBLite | consensus disorder prediction | 115 | 130 | - | - | |
Cco05g2281 | 388 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 35 | 377 | IPR044810 | GO:0003700(InterPro) | |
Cco05g2281 | 388 | FunFam | WRKY transcription factor 65 | 299 | 376 | - | - | |
Cco05g2281 | 388 | Pfam | Plant zinc cluster domain | 267 | 313 | IPR018872 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2281 | Cco-Chr5:31505655 | Cco05g2915 | Cco-Chr5:36685428 | 8.80E-57 | dispersed | |
Cco04g1457 | Cco-Chr4:30010269 | Cco05g2281 | Cco-Chr5:31505655 | 5.70E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59356 | PF03106 | WRKY | 4.00E-25 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2281 | - | - | - | 0.0 |