Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2281 ATGCTCCTTCTTAACAATAACATGGCTGTGGAGCTCATGGTGGGTTTTGGGGATGCTACTACTCCTACTAATTTCACGCCCAAGATGGAAGAAAATGCCGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAAAGCGTCCAGAATTTCCTACGTTTGATGTCCCATACTCCTAATCACCAACACTCCCAAGACGATTCTTCTGCTTCCATTACTCCTAATGCTATCGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAATAAATTCAAGAAGGTCATTTCTTTGCTCGACCGAAACAGAACCGGCCACGCACGTTTCAGAAGGGCTCCGGTTCTTACTACTACACCGCCCCCTCCTCCTCCGCCCAAGGTCAAGCCGCAGCATCAAGATCCGAGTTCGTCGTCTCCGATTTCAGTCCCTCATATTCAAGTAAAGAAACAAGAATCAGTGTCTGCTTTTAAGGTTTATTGCCCCACGCCCTCCCCTGTTGTGCGTTTGCCTCCTCTGCCTCACAACAACTCCCATCAGCCTTCACATCCACCCAATACCTTCCAAGCACAGCAAAATACTTCGTCGGTGGTACTCAAAAATGGGTCTGTAGATAGAAAAGATGCGACTACCACCATCAATTTTGCAGCCTCACCCCCGATTTCCGCTGCAAATTCGTATATTTCATCATTAACCGGAGACACCGAAAGCTTACAGCCATCTCTGTCATCTGGGTTCCAGTTCACCCACATGTCCCAGGTCTCTTCCGCAGGAAAGCCCCCTCTTTCATCTTCTTCGCTAAAGAGAAAATGCAATTCCATGGAGGATTCCGCCATGAAGTGTGGCTCGTCTTCCGGCCGGTGTCACTGTTCCAAGAAGAGCAGGAAAAACAGGATAAAAAGAGTCATCAGAGTTCCCGCCGTTAGCTCAAAACTTGCCGATATCCCACCAGACGATTACTCCTGGAGAAAGTACGGTCAAAAACCCATCAAAGGATCTCCTCATCCAAGGGGATATTACAAATGTAGCAGTCTGAGAGGCTGCCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAGCGCTTGTTCTCGAATCATCATAA 1167 48.59 MLLLNNNMAVELMVGFGDATTPTNFTPKMEENAAVSAVQEAASAGIQSVQNFLRLMSHTPNHQHSQDDSSASITPNAIAGYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPVLTTTPPPPPPPKVKPQHQDPSSSSPISVPHIQVKKQESVSAFKVYCPTPSPVVRLPPLPHNNSHQPSHPPNTFQAQQNTSSVVLKNGSVDRKDATTTINFAASPPISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCNSMEDSAMKCGSSSGRCHCSKKSRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPAALVLESS 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31505655 31507246 - CcPI632755_05g022810.1 Cco05g2281 179909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2281 388 Gene3D WRKY domain 302 376 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2281 388 SMART WRKY_cls 315 375 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2281 388 MobiDBLite consensus disorder prediction 107 142 - -
Cco05g2281 388 SUPERFAMILY WRKY DNA-binding domain 313 374 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2281 388 ProSiteProfiles WRKY domain profile. 310 376 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2281 388 Pfam WRKY DNA -binding domain 317 373 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2281 388 MobiDBLite consensus disorder prediction 115 130 - -
Cco05g2281 388 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 35 377 IPR044810 GO:0003700(InterPro)
Cco05g2281 388 FunFam WRKY transcription factor 65 299 376 - -
Cco05g2281 388 Pfam Plant zinc cluster domain 267 313 IPR018872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2281 Cco-Chr5:31505655 Cco05g2915 Cco-Chr5:36685428 8.80E-57 dispersed
Cco04g1457 Cco-Chr4:30010269 Cco05g2281 Cco-Chr5:31505655 5.70E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59356 PF03106 WRKY 4.00E-25 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2281 - - - 0.0