Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2291 ATGGGAAGCCCTGATAATCGGGTTGCTTCCGACTCCGCCGATAACACATCCAAGAATGACTCCGAAGACGACGACGACAATGGAGTTCAGAGCCCGCCTTCCCATCCTTGTCCTTTCTCAGAAGGAGAGAAGGTCCTCGCTTTTCATAGCTTCGTCATATATGAAGCTAAGGTACTGAAAACAGAATATCAGTTGAAAGAATGGCGATGTTATGTTCATTACCTTGGATGGAGCAAAACATGTAGATTAGAGGATGCCTCAATCTTGCTTGCAATAATTTCATATAATTCAATGCTGAAACTTCTTAAAGTTCGTGTAGAGATCAATGTGAATGCAGATGGTTGGGATGAGTGGGTAGGACTTGATAGATTACTGAAGTTTACTGAAGAGAATGTGAAGAAACAGCAGGAACTCAATGAGAAGAGGGGGACTGACAAGAAGGCATCTCGAGCATCCCAGACTAAGCCCAAGAATGTGATAAAAGGGAGGAAGCGAAAGAATGATGCTAGTAAGGAAAAGAGTGCCATGAATGTTGAAAAGCTTGTGAGCATACAGATTCCAGTTAAACTAAAGAAGCAGCTAGTTGATGACAGTGAGTTTGTAACACATCTTGGGAAGCTGGTAAAGCTCCCACGCACACCTAATGTAGAAGACATACTGAAGAAATATCTTGAATACAGGCTGAAGAAGGATGTAACGAAAGATGAATCGGTTGGAGAAATCGTGAAAGGGTTGATTTGTTACTTCGATAAAGCACTACCTGCAATGCTTCTATACAAGAGCGAACGCCAACAATATGAGGAATTAATCGTCAATGATGTATCCCCTTCTTCCGTATATGGTGCCGAACACCTTCTACGGCTATTTGTTAGGTTGCCTGAGTTATTGTCTCAAGCCAATATTGAAGAGGAAACTTTGATAGAACTGCAACAGAAGTTAGTTGACTTGCTCAAGTTTTTAAGGAAGAATCAGAATGCGTTTTTCTTGTCATCGTACCATGTGCCTGAGAATATAGAAACAAGTACCAACAATGCCGATGACTAA 1044 41.48 MGSPDNRVASDSADNTSKNDSEDDDDNGVQSPPSHPCPFSEGEKVLAFHSFVIYEAKVLKTEYQLKEWRCYVHYLGWSKTCRLEDASILLAIISYNSMLKLLKVRVEINVNADGWDEWVGLDRLLKFTEENVKKQQELNEKRGTDKKASRASQTKPKNVIKGRKRKNDASKEKSAMNVEKLVSIQIPVKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDILKKYLEYRLKKDVTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVNDVSPSSVYGAEHLLRLFVRLPELLSQANIEEETLIELQQKLVDLLKFLRKNQNAFFLSSYHVPENIETSTNNADD 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31590975 31596904 - CcPI632755_05g022910.1 Cco05g2291 179919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2291 347 ProSiteProfiles MRG domain profile. 178 345 - -
Cco05g2291 347 Pfam MRG 164 332 IPR026541 -
Cco05g2291 347 MobiDBLite consensus disorder prediction 1 15 - -
Cco05g2291 347 Gene3D - 23 155 - -
Cco05g2291 347 MobiDBLite consensus disorder prediction 1 36 - -
Cco05g2291 347 MobiDBLite consensus disorder prediction 136 152 - -
Cco05g2291 347 Gene3D MRG domain 175 345 IPR038217 -
Cco05g2291 347 FunFam Chromatin modification-related protein EAF3 178 341 - -
Cco05g2291 347 MobiDBLite consensus disorder prediction 136 174 - -
Cco05g2291 347 PIRSF EAF3_MRG15 33 345 IPR008676 GO:0005634(InterPro)|GO:0006325(InterPro)|GO:0006355(InterPro)
Cco05g2291 347 PANTHER MORTALITY FACTOR 4-LIKE PROTEIN 37 337 IPR008676 GO:0000123(PANTHER)|GO:0005634(InterPro)|GO:0006325(InterPro)|GO:0006355(InterPro)|GO:0016573(PANTHER)
Cco05g2291 347 SUPERFAMILY Chromo domain-like 36 140 IPR016197 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2291 K11339 - - csv:101219247 582.793
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1467 Cco-Chr4:30110012 Cco05g2291 Cco-Chr5:31590975 1.00E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g701 . . . . . . Bma04g00149 . . . . Cma09g00262 . . . Cpe06g00181 . . . . . . . . . . . . . . . Cone4ag1600 Cone7ag1349 . . Lsi04g01515 Csa04g02449 . . . . . . . . . . . . Cmo09g00256 . . . Car09g00220 . . Bhi09g03270 . . . . . . Cla05g02080 Cam05g2231 Cec05g2250 Cco05g2291 Clacu05g2225 Cmu05g2091 Cre05g2216 . . Chy07g00165 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001712 2 6 2 2 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 2 2 2 69