Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g2296 | ATGGAGGCCATTTGGATTTGCACCTCCAAGTTCAAAATAACATGTGCATCCATGGAACCTCATACAATTCCTTGGCTCTCTCGTTTTCTCATCTCATTCTCTCTTCTCTTCACGCTCATTCTTCTTTCCAAGCTCAGAAAAGTAAACCACAGAAAACTTCCACCAAGCCCACCTTCCCTTCCGGTCATCGGTCACCTTCATCTCCTCAAAGACCCTTTCCACCGAGTGCTGCACGATCTCTCCAACAAATACGGTCCAATTCTATCCCTTTCAATCGGCTCCCGTCCGGTGGTGGTTGTCTCCTCCCCCACCGCTGTCCGTGAGTGCTTCACCAAAAACGACATCGTATTCGCCAATCGCCCTCGCTTACTTTCAGGGAAGTACATCAATTACAACTACACCGCAGTGGGATTCGCCCCCTATGGCCAGCACTGGCGCAACATGCGCCGCATAGCCACGACTCAGCTACTCTCCAACCACCGCCTCAACACGTATCTCAACACTCGAGTGGAAGAACTAAAGTTTTGGGTAAAGAATTTGTACAAATTGGTTTGTAGTGGCGATTTTATTGGGGTGGAAATGAAGTCGAAATTGAAGGAACTATCTTTCAACGTGGTGATGAGGATGATTAGTGGGAAACGGTATTTTGGTGTGGAAGTGGAGAATGTGGAGGAAGCCTTGGAGTTTAGGGATATTATGAAGGAGCTTCTTGAATTGAGTGGGGCGACGAATGCAGCGGATTTTTTGCCCATTTTGAGAGTGTTTGATTTTCAAGGACTTGAGAAGAGGATGTTGAAAGCGAGTGGGCGAGCTGATGTTTTCCTACAAAAACTCATTGATGAACACAGGGAAAGGAGAGTTTCACGTTGGCCGGAGGACAAACATGGAAAAACCATGATTCAAACTCTGCTCTCCTTGCAAGAATCTCAACCCCATTATTACTCCGATGATATAATCAAGGGTCATGTTCTGACGATGTTGGCTGCGGGTACTGATACAACTTCAGGAACAATAGAATGGGCGATGTCGCTACTTTTGAATCATCCAACGGTGATGAAGAAAGCTTGGATTGAGATAAGAGAAAGGGTTGGGGAGAATCGGATGGTGGAGGAAGGCGATGTGAGTAACCTCAAATATGTGGAAGCCATAATCTACGAGACTCTTCGACTGTTTCCAGCAGCTCCACTGTTGGTCCCACATGAATGTTCTGAAGATTGTAGAATTGAAGGATTTGAGGTAGCCAAAGGAACAATGTTGTTGGTGAATGCATGGGCCATTCATAGGGACTCCAAAGTGTGTGAAGATCCCACCAGCTTCCAACCAGAGAGGTTTCTAAATTGGGAAGGCGTTGAATCCTACAAGTGGATACCTTTTGGAATGGGGAGGAGGGCTTGCCCAGGGGCTGCCCTTGCCCAACGAGTCGTGGGATTAACATTGGCCACTTTGATTCAGTGCTTTGAGTGGGACAAGGTTGATGAACAACAAATTGATGTGTCTGAAGGAAGTGGAATCCCTATGCCTAAAGCCAAAGCTTTGGAGGCAATGTGTAAACCTCGTACCTCCATGCTTCATTTACTGGCTCATCTTTGA | 1590 | 46.6 | MEAIWICTSKFKITCASMEPHTIPWLSRFLISFSLLFTLILLSKLRKVNHRKLPPSPPSLPVIGHLHLLKDPFHRVLHDLSNKYGPILSLSIGSRPVVVVSSPTAVRECFTKNDIVFANRPRLLSGKYINYNYTAVGFAPYGQHWRNMRRIATTQLLSNHRLNTYLNTRVEELKFWVKNLYKLVCSGDFIGVEMKSKLKELSFNVVMRMISGKRYFGVEVENVEEALEFRDIMKELLELSGATNAADFLPILRVFDFQGLEKRMLKASGRADVFLQKLIDEHRERRVSRWPEDKHGKTMIQTLLSLQESQPHYYSDDIIKGHVLTMLAAGTDTTSGTIEWAMSLLLNHPTVMKKAWIEIRERVGENRMVEEGDVSNLKYVEAIIYETLRLFPAAPLLVPHECSEDCRIEGFEVAKGTMLLVNAWAIHRDSKVCEDPTSFQPERFLNWEGVESYKWIPFGMGRRACPGAALAQRVVGLTLATLIQCFEWDKVDEQQIDVSEGSGIPMPKAKALEAMCKPRTSMLHLLAHL | 529 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 31624290 | 31626479 | - | CcPI632755_05g022960.1 | Cco05g2296 | 179924 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g2296 | 529 | Pfam | Cytochrome P450 | 54 | 508 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2296 | 529 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 458 | 467 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco05g2296 | 529 | FunFam | Cytochrome P450 family protein | 45 | 522 | - | - | |
| Cco05g2296 | 529 | PANTHER | CYTOCHROME P450 82C3-RELATED | 35 | 521 | IPR050651 | - | |
| Cco05g2296 | 529 | CDD | CYP81 | 85 | 512 | - | - | |
| Cco05g2296 | 529 | PRINTS | P450 superfamily signature | 329 | 346 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2296 | 529 | PRINTS | P450 superfamily signature | 465 | 476 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2296 | 529 | PRINTS | P450 superfamily signature | 382 | 393 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2296 | 529 | PRINTS | P450 superfamily signature | 456 | 465 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2296 | 529 | Gene3D | Cytochrome P450 | 40 | 524 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2296 | 529 | PRINTS | E-class P450 group I signature | 455 | 465 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2296 | 529 | PRINTS | E-class P450 group I signature | 465 | 488 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2296 | 529 | PRINTS | E-class P450 group I signature | 81 | 100 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2296 | 529 | PRINTS | E-class P450 group I signature | 201 | 219 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2296 | 529 | PRINTS | E-class P450 group I signature | 422 | 446 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2296 | 529 | PRINTS | E-class P450 group I signature | 105 | 126 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2296 | 529 | PRINTS | E-class P450 group I signature | 318 | 335 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2296 | 529 | PRINTS | E-class P450 group I signature | 381 | 399 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2296 | 529 | PRINTS | E-class P450 group I signature | 338 | 364 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2296 | 529 | SUPERFAMILY | Cytochrome P450 | 54 | 519 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g2296 | Cco-Chr5:31624290 | Cco06g0155 | Cco-Chr6:1584689 | 5.60E-147 | dispersed | |
| Cco05g2296 | Cco-Chr5:31624290 | Cco05g2299 | Cco-Chr5:31637494 | 1.90E-134 | proximal | |
| Cco04g1470 | Cco-Chr4:30145027 | Cco05g2296 | Cco-Chr5:31624290 | 1.60E-140 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g2296 | K13260 | - | csv:101207002 | 853.203 |