Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2298 ATGGGTTCATGTGAGGCAGCGGTGGTAGCAATGAGCATGGCAAAAAGCAGCGAATCTCAGTTTCCGGATCTTAGGAAGCAGCTTAGGGCATTTGAAAGCGATTCGTCGGAGATCATCACGCTCTGCGAGGCGGAATATGTGGAGAAAATCCTCGAGGAAACCTTGAGGAAAGTGCTTGTGCACAAGCAATTGTTCTTGCTCCAGAAGCAGTGCAATTCCTCTGCAACTTCCGCGGAACTTTTACGCAGAAAGAATCGGCGCGGTTCTGTGATTCAGCAGGTTAATCAGCCACTGCAATTGCCTTTGCTTTCTCCGGTGAGGTCTGAACATTTAAGAGCGACGTTCTCCCCCAATTTGTTTCCACTGGCAATCCGCTCCCTGATCGAGGCCGTTCCGACGGAGTGCCCTCTATCCCACCAATCCCTAGAAAACTCGTCGATTGTTCCCGACGGCGATAACAGCGGTCCTGGAAACCGGCGAACCCTCGGAGTTGCCGGATTTACTTTATTTCGTTTCGTTGTTTTGAAAACCAAAACTGGCGCTTCTCATTTTGCCCAAAATCTATTCCCAATTTCATTGTTAGTACATATTCTACCCGCGCCAACGCCCAAACCTCACTTAACCGAACATTCCCCTTCTCCTTCTCACTTCCCTTTTCAGATCCCAGGTCGCACTGAAACTATGGCGGATAAGGAGAATATATTTCGATTTACTAGGGGTTCTAAGAAGAGGGCCGCCGAAGCCGCTACCCCCGACGACCGCTCTGCTAACAAGAAGAGAGTCGTTCTTGGAGAGCTCCCTATTTTACAGAATGCTACTTCTTCCGTCGATCGTAAGTCCAGGTCTAGAGCCACCAGGCAGAGGCGGAGAGTAAAATCAAGGGATACTGCCGGCACAAGTGCTGCTGCTGCTGCTGCTCCTGAAATCAATACACTTCCGGAAGGCGATGTCAAGTTATCAGATGAGGGCAATTCGGAAGACCCGCAAATGTGCAGGGTTTACGCCTCTGATATTTATGAATATCTTCGCGCAATGGAGACTGATCCAAGAAGAAGACCCTTACCAGATTACATCGGGAGGGTACAAAAGGATATTAGTGCCAATATGAGGGGAATTCTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTAGTTTCAGATACTCTTTACCTCTCTATTTCATATGTAGACAGATACTTATCTCTAAATGAAATCAGCAGGCAAAAACTTCAGTTGCTGGGTGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCACATGTTGAAGAATTTGTTTATATCACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAAGCTGAAATATTGAAGTCACTAGAATTTGAACTTGGAAATCCCACAATAAAGACATTTTTAAGGAGATTCACAATGATTGCTCAAGAGACTTATGAGTTTAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTCATATTTCTAGCACGATTTATGATCCAACCTAAGAAGCATCCTTGGACCTCCAGGTTGGAGCATTTTACTGGATATAAGCCAGCTGATATCAAAGATTGCGTTCTACTTGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACACAAGTTCAAATTTGTATCTATCATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTGTCTACTCGATTGCATTTAAGCTGGCACTTTTCTTTAACCTTCATACTGAACTGCCATACAAAGCCATACGACTTTTCCTTCATTGGGAGACTTTTCCCTCTGACCTTTCTCTCCAAGTAATCTGA 1932 44.46 MGSCEAAVVAMSMAKSSESQFPDLRKQLRAFESDSSEIITLCEAEYVEKILEETLRKVLVHKQLFLLQKQCNSSATSAELLRRKNRRGSVIQQVNQPLQLPLLSPVRSEHLRATFSPNLFPLAIRSLIEAVPTECPLSHQSLENSSIVPDGDNSGPGNRRTLGVAGFTLFRFVVLKTKTGASHFAQNLFPISLLVHILPAPTPKPHLTEHSPSPSHFPFQIPGRTETMADKENIFRFTRGSKKRAAEAATPDDRSANKKRVVLGELPILQNATSSVDRKSRSRATRQRRRVKSRDTAGTSAAAAAAPEINTLPEGDVKLSDEGNSEDPQMCRVYASDIYEYLRAMETDPRRRPLPDYIGRVQKDISANMRGILVDWLVEVAEEYKLVSDTLYLSISYVDRYLSLNEISRQKLQLLGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEAEILKSLEFELGNPTIKTFLRRFTMIAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQPKKHPWTSRLEHFTGYKPADIKDCVLLVHDLYLSRRGGALAAIREKYKQHKFKFVSIMPSPPEIPIPYFEDVVYSIAFKLALFFNLHTELPYKAIRLFLHWETFPSDLSLQVI 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31630106 31636003 - CcPI632755_05g022980.1 Cco05g2298 179926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2298 643 SMART cyclin_7 472 560 IPR013763 -
Cco05g2298 643 SMART cyclin_7 375 459 IPR013763 -
Cco05g2298 643 Gene3D - 337 586 - -
Cco05g2298 643 CDD CYCLIN_AtCycA-like_rpt2 468 582 - -
Cco05g2298 643 SUPERFAMILY Cyclin-like 326 465 IPR036915 -
Cco05g2298 643 MobiDBLite consensus disorder prediction 238 260 - -
Cco05g2298 643 FunFam Mitotic cyclin 6 353 453 - -
Cco05g2298 643 CDD CYCLIN_AtCycA_like_rpt1 327 464 - -
Cco05g2298 643 Gene3D - 351 466 - -
Cco05g2298 643 FunFam Cyclin A1 455 587 - -
Cco05g2298 643 Pfam Cyclin, N-terminal domain 337 465 IPR006671 -
Cco05g2298 643 PANTHER CYCLINS 321 579 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco05g2298 643 SMART Cyclin_C_2 468 591 IPR004367 -
Cco05g2298 643 MobiDBLite consensus disorder prediction 238 325 - -
Cco05g2298 643 SUPERFAMILY Cyclin-like 468 593 IPR036915 -
Cco05g2298 643 ProSitePatterns Cyclins signature. 370 401 IPR048258 -
Cco05g2298 643 Pfam Cyclin, C-terminal domain 468 590 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0726 Cco-Chr2:7477161 Cco05g2298 Cco-Chr5:31630106 6.00E-84 dispersed
Cco05g2298 Cco-Chr5:31630106 Cco09g0233 Cco-Chr9:2091187 6.30E-76 dispersed
Cco08g0731 Cco-Chr8:18900794 Cco05g2298 Cco-Chr5:31630106 6.00E-82 transposed
Cco05g2298 Cco-Chr5:31630106 Cco08g1812 Cco-Chr8:29187366 1.10E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2298 K06627 - csv:101207493 650.203