Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2313 ATGAGTTGCAACGGTTGCCGAGTACTTCGAAAGGGCTGCAGCGAAACCTGCGTTTTAAGGTCAAGTCTCCATTGGATTGATTCTCCAGAAGCCCAAGGCAACGCCACTCTGTTTCTCGCTAAATTCTTTGGCCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCTTATCATCAAAGACCCGCTCTGTTTCAGTCTCTGTTATTCGAAGCCTGTGGCCGCACCGTTAACCCAGTTAGCGGAGCCGTTGGTCTCTTGTCCAGTGGGAACTGGCACGTTTGTCAAGCGGCGACGGATACCGTTCTCAACGGCGGAGTTCTCCGCCCGATACCCGGAATCGAAAGTTCTGGAAATCCCATCCCCAACGTCGATGATTCCGCGCTTACTTTCAATACCGATGTCTGGACAACCACCACACACAATCTTCAATTTTACCCATCTACTCCGTCCGATTTCCGGTGCCTTCCGGATCTCTCTCTAGGCAGAGCGAAGAATCATCCATTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACCAGCTTCGGAAGCGGCGATCTCGGCGACCAACGGAAAGAGACGAAGCTTTTAAACTTATTCGTCTGA 612 51.63 MSCNGCRVLRKGCSETCVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAATDTVLNGGVLRPIPGIESSGNPIPNVDDSALTFNTDVWTTTTHNLQFYPSTPSDFRCLPDLSLGRAKNHPLENRRSLDSEESVMTSFGSGDLGDQRKETKLLNLFV 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31710860 31711564 - CcPI632755_05g023130.1 Cco05g2313 179941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2313 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 135 - GO:0010468(PANTHER)
Cco05g2313 203 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Cco05g2313 203 MobiDBLite consensus disorder prediction 166 187 - -
Cco05g2313 203 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2313 Cco-Chr5:31710860 Cco06g1678 Cco-Chr6:27368673 3.10E-37 dispersed
Cco04g1501 Cco-Chr4:30444222 Cco05g2313 Cco-Chr5:31710860 1.50E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59358 PF03195 LOB 1.40E-23 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2313 - - - 0.0